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Report for Sequence Feature Glyma03g35791

Feature Type:gene_model
Chromosome:Gm03
Start:42893807
stop:42898352
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g35791
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36060AT Annotation by Michelle Graham. TAIR10: MMS ZWEI homologue 3 | chr2:15143012-15143998 REVERSE LENGTH=145 SoyBaseE_val: 2.00E-99ISS
GO:0006301GO-bp Annotation by Michelle Graham. GO Biological Process: postreplication repair SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0031372GO-cc Annotation by Michelle Graham. GO Cellular Compartment: UBC13-MMS2 complex SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016881GO-mf Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity SoyBaseN/AISS
KOG0896 KOG Ubiquitin-conjugating enzyme E2 JGI ISS
PTHR24067Panther UBIQUITIN-CONJUGATING ENZYME E2 JGI ISS
PTHR24067:SF8Panther SUBFAMILY NOT NAMED JGI ISS
PF00179PFAM Ubiquitin-conjugating enzyme JGI ISS
UniRef100_C6TJX5UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TJX5_SOYBN SoyBaseE_val: 2.00E-105ISS
UniRef100_E9JFV5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating family protein n=3 Tax=fabids RepID=E9JFV5_9ROSI SoyBaseE_val: 1.00E-98ISS

Expression Patterns of Glyma03g35791
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g35791 not represented in the dataset
Glyma03g35791 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35791
ParalogEvidenceComments
Glyma19g38450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35791 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g199900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g35791
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g35791
>Glyma03g35791.2   sequence type=transcript   gene model=Glyma03g35791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAGACCGAGAGAACATGTGTGATTACGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAATCGGAGATGGAACAGTTAGCTATGGAATGGATGATGGTGACGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGCCCCTATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGTTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTGGTCTTCTTGCAAATTGGCAACGGAGGTTTACCATGGAAGATATACTGACCCAGCTGAAGAAGGAAATGGCGGCTTCACATAACCGCAAGCTTGTCCAACCTCCTGAAGGTACTCACTATTAGTGTCCAAGATCATACCGATATTGGATCATATTGCATTTGCAGTATGCAATATATAGTATGTATTACTCTTGATCCTTCTAAATTCAAGAACATAATGGGGAATGCTCAAAAGAGCTTCATCTTTACCTCCATTGAGTTGTTTTGTTGCAATACATTTTCAACTGTGTTGAAGGGATGCTCTTTGATTTGTCCTAATTATTGAAAGCAACTCTTAAAGTAGTGTTCTTTTCTTATTATAACAGTTTTTCCCGTTTTGACCTTGCTTCTTTCTTAATTCACTTGCTTTCTGACTTTTAATTTAGCGGAGGCTATATAAAAAAGTGACAAATGCTGTTTGGATGTGTGCATGTCTTTGGTTGGTGCATGATATGTTCCGTGTTTTTAAATGTCAACGTGATTCTCTCTTGAGGATTTGGGTTCTTACATTATCTA
Coding sequences of Glyma03g35791
>Glyma03g35791.1   sequence type=CDS   gene model=Glyma03g35791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAATCGGAGATGGAACAGTTAGCTATGGAATGGATGATGGTGACGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGCCCCTATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGTTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTGGTCTTCTTGCAAATTGGCAACGGAGGTTTACCATGGAAGATATACTGACCCAGCTGAAGAAGGAAATGGCGGCTTCACATAACCGCAAGCTTGTCCAACCTCCTGAAGGTACTCACTATTAG

>Glyma03g35791.2   sequence type=CDS   gene model=Glyma03g35791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGATTACGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAATCGGAGATGGAACAGTTAGCTATGGAATGGATGATGGTGACGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGCCCCTATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGTTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTGGTCTTCTTGCAAATTGGCAACGGAGGTTTACCATGGAAGATATACTGACCCAGCTGAAGAAGGAAATGGCGGCTTCACATAACCGCAAGCTTGTCCAACCTCCTGAAGGTACTCACTATTAG
Predicted protein sequences of Glyma03g35791
>Glyma03g35791.1   sequence type=predicted peptide   gene model=Glyma03g35791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLGSSGSSVVVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQLKKEMAASHNRKLVQPPEGTHY*

>Glyma03g35791.2   sequence type=predicted peptide   gene model=Glyma03g35791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCDYVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQLKKEMAASHNRKLVQPPEGTHY*






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