SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06260 | AT | Annotation by Michelle Graham. TAIR10: TLD-domain containing nucleolar protein | chr5:1902755-1904835 REVERSE LENGTH=424 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG2557 | KOG | Uncharacterized conserved protein, contains TLDc domain | JGI | ISS | |
| PTHR23354 | Panther | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED | JGI | ISS | |
| PTHR23354:SF41 | Panther | JGI | ISS | ||
| PF07534 | PFAM | TLD | JGI | ISS | |
| UniRef100_F4JJY3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding EF-hand family protein n=3 Tax=Arabidopsis thaliana RepID=F4JJY3_ARATH | SoyBase | E_val: 2.00E-98 | ISS |
| UniRef100_I1JQ61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JQ61_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g35770 not represented in the dataset |
Glyma03g35770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g38410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g199700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g35770.2 sequence type=transcript gene model=Glyma03g35770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTACCCACGTATGAGTATATTTCAGAAATCAAGAAACTTGATGATGGGTGTGGGTATAGAAGTAGCATGAAAAGGAAAGACGTGCCACAAAACTATACGGAACCTATAGACTCTGGAGTCTGGACTGAAATCGAAGTCGAAGCAAGCAATGGGCAACGCTCAGTCACCTTCCAACAATGATCCTCGATATGTTTCAGCAACCAGTCATATTTTGGATTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAAGCTAACCTTTGAAGACCTCGTGGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCCATTTTTAATGATATATTACGCATAAAAGGTTCTGATGATAGATCAAGTTCACATGAGGATATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCAAGATGGAGGGGGCACTGAGGGGACAATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAAAGTATTGCTTGCATGCGTGTGATATAATCCACCCATTGGCGTTTTAATATCATTGTTAATATCATAGTAATCTTTGTTAAATAACATATTGTGAAACCTTTTTTTTTATAATTCTTTTTGGTACCTTGAGAATAATAATTAACATACATTGGGGCTACATTGTACTTGCAATCTTGCATGATGGATACCTGCGAAGATTTTTTCAGTATCCTAACAACATATTATTTAACACATTTATTTTAGTACACTCTATTATTAGTTAAAACTTGTTGAAATCTGCAAAATCA
>Glyma03g35770.1 sequence type=CDS gene model=Glyma03g35770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAACGCTCAGTCACCTTCCAACAATGATCCTCGATATGTTTCAGCAACCAGAGCTTTTACTCAAAAGGAACTTGAAGACTTGAGGTCTCGGTTCAACAATCTGGCTAATCAATCCCAGAGCAACGGGAAATACATCCCTCCCTCCGTTTTTCAGTCATATTTTGGATTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAAGCTAACCTTTGAAGACCTCGTGGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCCATTTTTAATGATATATTACGCATAAAAGGTTCTGATGATAGATCAAGTTCACATGAGGATATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCAAGATGGAGGGGGCACTGAGGGGACAATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAA >Glyma03g35770.2 sequence type=CDS gene model=Glyma03g35770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAAGCTAACCTTTGAAGACCTCGTGGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCCATTTTTAATGATATATTACGCATAAAAGGTTCTGATGATAGATCAAGTTCACATGAGGATATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCAAGATGGAGGGGGCACTGAGGGGACAATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAA
>Glyma03g35770.1 sequence type=predicted peptide gene model=Glyma03g35770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNAQSPSNNDPRYVSATRAFTQKELEDLRSRFNNLANQSQSNGKYIPPSVFQSYFGFHGPLGERMFDLVTQERKDQKLTFEDLVVAKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILRIKGSDDRSSSHEDIVNIFLNAANFSKQDGGGTEGTMSFEDFRSWCTHLPSVRKLLGSLLLPPDSGRPGYQIPKLLTSKAIDSNIILLRKEYTWHIGGALSHQDLEDWNLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMVGLANSSE* >Glyma03g35770.2 sequence type=predicted peptide gene model=Glyma03g35770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFDLVTQERKDQKLTFEDLVVAKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILRIKGSDDRSSSHEDIVNIFLNAANFSKQDGGGTEGTMSFEDFRSWCTHLPSVRKLLGSLLLPPDSGRPGYQIPKLLTSKAIDSNIILLRKEYTWHIGGALSHQDLEDWNLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMVGLANSSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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