Glyma03g35770 - SoyBase

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Report for Sequence Feature Glyma03g35770

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42864415
stop:	42869305
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06260	AT	Annotation by Michelle Graham. TAIR10: TLD-domain containing nucleolar protein \| chr5:1902755-1904835 REVERSE LENGTH=424	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG2557	KOG	Uncharacterized conserved protein, contains TLDc domain	JGI		ISS
PTHR23354	Panther	NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED	JGI		ISS
PTHR23354:SF41	Panther		JGI		ISS
PF07534	PFAM	TLD	JGI		ISS
UniRef100_F4JJY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding EF-hand family protein n=3 Tax=Arabidopsis thaliana RepID=F4JJY3_ARATH	SoyBase	E_val: 2.00E-98	ISS
UniRef100_I1JQ61	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JQ61_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g35770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35770

Paralog	Evidence	Comments
Glyma19g38410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g199700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g35770

Limit To All Plant Sequences

>Glyma03g35770.2   sequence type=transcript   gene model=Glyma03g35770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTACCCACGTATGAGTATATTTCAGAAATCAAGAAACTTGATGATGGGTGTGGGTATAGAAGTAGCATGAAAAGGAAAGACGTGCCACAAAACTATACGGAACCTATAGACTCTGGAGTCTGGACTGAAATCGAAGTCGAAGCAAGCAATGGGCAACGCTCAGTCACCTTCCAACAATGATCCTCGATATGTTTCAGCAACCAGTCATATTTTGGATTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAAGCTAACCTTTGAAGACCTCGTGGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCCATTTTTAATGATATATTACGCATAAAAGGTTCTGATGATAGATCAAGTTCACATGAGGATATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCAAGATGGAGGGGGCACTGAGGGGACAATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAAAGTATTGCTTGCATGCGTGTGATATAATCCACCCATTGGCGTTTTAATATCATTGTTAATATCATAGTAATCTTTGTTAAATAACATATTGTGAAACCTTTTTTTTTATAATTCTTTTTGGTACCTTGAGAATAATAATTAACATACATTGGGGCTACATTGTACTTGCAATCTTGCATGATGGATACCTGCGAAGATTTTTTCAGTATCCTAACAACATATTATTTAACACATTTATTTTAGTACACTCTATTATTAGTTAAAACTTGTTGAAATCTGCAAAATCA

Coding sequences of Glyma03g35770

Limit To All Plant Sequences

>Glyma03g35770.1   sequence type=CDS   gene model=Glyma03g35770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAACGCTCAGTCACCTTCCAACAATGATCCTCGATATGTTTCAGCAACCAGAGCTTTTACTCAAAAGGAACTTGAAGACTTGAGGTCTCGGTTCAACAATCTGGCTAATCAATCCCAGAGCAACGGGAAATACATCCCTCCCTCCGTTTTTCAGTCATATTTTGGATTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAAGCTAACCTTTGAAGACCTCGTGGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCCATTTTTAATGATATATTACGCATAAAAGGTTCTGATGATAGATCAAGTTCACATGAGGATATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCAAGATGGAGGGGGCACTGAGGGGACAATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAA

>Glyma03g35770.2   sequence type=CDS   gene model=Glyma03g35770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAAGCTAACCTTTGAAGACCTCGTGGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCCATTTTTAATGATATATTACGCATAAAAGGTTCTGATGATAGATCAAGTTCACATGAGGATATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCAAGATGGAGGGGGCACTGAGGGGACAATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAA

Predicted protein sequences of Glyma03g35770

Limit To All Plant Sequences

>Glyma03g35770.1   sequence type=predicted peptide   gene model=Glyma03g35770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNAQSPSNNDPRYVSATRAFTQKELEDLRSRFNNLANQSQSNGKYIPPSVFQSYFGFHGPLGERMFDLVTQERKDQKLTFEDLVVAKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILRIKGSDDRSSSHEDIVNIFLNAANFSKQDGGGTEGTMSFEDFRSWCTHLPSVRKLLGSLLLPPDSGRPGYQIPKLLTSKAIDSNIILLRKEYTWHIGGALSHQDLEDWNLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMVGLANSSE*

>Glyma03g35770.2   sequence type=predicted peptide   gene model=Glyma03g35770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFDLVTQERKDQKLTFEDLVVAKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILRIKGSDDRSSSHEDIVNIFLNAANFSKQDGGGTEGTMSFEDFRSWCTHLPSVRKLLGSLLLPPDSGRPGYQIPKLLTSKAIDSNIILLRKEYTWHIGGALSHQDLEDWNLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMVGLANSSE*

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