Glyma03g35710 - SoyBase

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Report for Sequence Feature Glyma03g35710

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42827027
stop:	42833054
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24280	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr2:10334622-10336927 FORWARD LENGTH=494	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0005764	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: lysosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
KOG2183	KOG	Prolylcarboxypeptidase (angiotensinase C)	JGI		ISS
PTHR11010	Panther	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	JGI		ISS
PTHR11010:SF8	Panther	LYSOSOMAL PRO-X CARBOXYPEPTIDASE	JGI		ISS
PF05577	PFAM	Serine carboxypeptidase S28	JGI		ISS
UniRef100_B9SX01	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lysosomal pro-X carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9SX01_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233729B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233729B related cluster n=1 Tax=unknown RepID=UPI000233729B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g35710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35710

Paralog	Evidence	Comments
Glyma19g38351	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g199100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g35710

Limit To All Plant Sequences

>Glyma03g35710.1   sequence type=CDS   gene model=Glyma03g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATTGGCTTTCAGTTCATAATAATCACACTCTTCTCTCTATTTTCGGCTCCCTCACTCACTTTTGCTTTTGTCCCTATCCTTCCCAGATTTCCTTCTTCAGCAGTTAGTGCAGAGCTGAAGCAACGCTCTCATTCTTCCCAAAATGGGCTTTACAGAACAAAATTCTTCACCCAAATACTCGACCACTTCAATTTTAATCCCCAAAGCAATCACACTTTTCAACAAAGGTATCTCATCAACGATACCTTTTGGGGTGGTGCCAAGAACAATGCTCCAATCTTTGTCTACACTGGCAATGAAGGGAACATAGAATGGTTCACGCAGAACACAGGCTTTATGTTCGAAAATGCTCCTTCTTTTCAAGCCCTTTTGGTTTTCATCGAGCATAGATTTTATGGAAAATCAATACCATTTGGGGGAAACAAGACGGTTGCATATGCAAATACTAGCACACTTGGGTATTTGAGCTCAACACAGGCATTAGCTGATTATGCTACTCTCATCATTGATTTGAAGAAGAATTTGTCAGCAACTGATTCTCCTGTTGTGGTTTTCGGAGGATCCTATGGAGGAATGTTGGCTGCTTGGTTCAGGATGAAGTATCCACACGTTGCAATTGGAGCTCTAGCATCCTCAGCTCCAATTCTCCATTTCATGGGTTTGGTTTCGCCAGATATCTTCAACAACATCATCACACAAGACTTCAGGAGCGAGAGTGAGAATTGTTACAAAGTGATAAAAGGGTCTTGGGATCTGATAGACGACACGGCCAATAAACCCGGAGGAATGGAACTGCTGCGGAAAACATTCAGAATATGCAAGAGCGATGATTTTGGGCCTGGTTCTTTGGAAGGTTGGCTTCGGGCGGCGTGGATTTATACAGCCATGACAGATTACCCGACACCATCCAATTTCCTGAATCCCTTGCCAGCATATCCGGTGAAAAAGATGTGCGAGGCCATTGACAGCTCAGTAACGGGAAATAATAGATTAGCCAAGTTGCATGCAGCAGCCAGTGTCTACTACAACTATACAGGCAAAGCAAGATGTTTCGATTTGGATGACAATTCTGATCCTCATGATCTTGGAGGATGGCAATGGCAGGCTTGTACGGAGATGATAATGCCCGTAGGTGGAAGCAACAAGGAGAGCATATTTCCAGAATATGAGTGGTCATACGAAGCCAGAGCCTCTTGGTGTGACTTTTTCTACAACGTACAGCCAAGACCACACTGGATTACAACTGAGTTTGGCGGCCATGCTGTAGAGAGAGTTCTGAAAAGGTCTGCCAGCAACATTATATTTTTTAATGGTTTAAGAGATCCTTGGAGTGGTGGAGGGGTGTTGAAGACTATATCAAAAACATTAGTTGCTATAGTTGCAAAAAAAGGAGCTCATCATGTAGACTTAAGGTTCTCAAGTAAGGAAGATCCACAGTGGCTTAAAGATGTAAGGAAACTAGAGGTAAATATCATAGCAAGTTGGATCTCACAATACCATCAAGACCTACAATCCAATAGCTAA

Predicted protein sequences of Glyma03g35710

Limit To All Plant Sequences

>Glyma03g35710.1   sequence type=predicted peptide   gene model=Glyma03g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIGFQFIIITLFSLFSAPSLTFAFVPILPRFPSSAVSAELKQRSHSSQNGLYRTKFFTQILDHFNFNPQSNHTFQQRYLINDTFWGGAKNNAPIFVYTGNEGNIEWFTQNTGFMFENAPSFQALLVFIEHRFYGKSIPFGGNKTVAYANTSTLGYLSSTQALADYATLIIDLKKNLSATDSPVVVFGGSYGGMLAAWFRMKYPHVAIGALASSAPILHFMGLVSPDIFNNIITQDFRSESENCYKVIKGSWDLIDDTANKPGGMELLRKTFRICKSDDFGPGSLEGWLRAAWIYTAMTDYPTPSNFLNPLPAYPVKKMCEAIDSSVTGNNRLAKLHAAASVYYNYTGKARCFDLDDNSDPHDLGGWQWQACTEMIMPVGGSNKESIFPEYEWSYEARASWCDFFYNVQPRPHWITTEFGGHAVERVLKRSASNIIFFNGLRDPWSGGGVLKTISKTLVAIVAKKGAHHVDLRFSSKEDPQWLKDVRKLEVNIIASWISQYHQDLQSNS*

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