SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11560 | AT | Annotation by Michelle Graham. TAIR10: LETM1-like protein | chr3:3639553-3643450 FORWARD LENGTH=619 | SoyBase | E_val: 5.00E-133 | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| PTHR14009 | Panther | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN | JGI | ISS | |
| PTHR14009:SF4 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_I1JQ54 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ54_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8VYL0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LETM1-like protein n=1 Tax=Arabidopsis thaliana RepID=Q8VYL0_ARATH | SoyBase | E_val: 2.00E-130 | ISS |
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Glyma03g35675 not represented in the dataset |
Glyma03g35675 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g198700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g35675.1 sequence type=CDS gene model=Glyma03g35675 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCACGGAGATAACTGGTAATTTGAAGGACATGCTGGTTGATGTACTTTCTATAAGCCGAGCTTACGATACTATAAAGTATGTTGGTCTGCACAGAGAATTTCTTGTTCATTTTGGTCCTCAAGCCGCAGCATGTGGAGAAAAAGTTGAGCAAGGTTCAGAAGGGGTTGCTTTCTGGGTTAATATTGCTCAGAGGCAGCTGCAGCAAGCTATTGATAAGGAGAGAATATGGTCAAGACTGACAACATCTGAAAGTATAGAGGTTTTGGAGAAGGATTTAGCTATATTTGGGTTTTTTGTTGCTTTAGGCAGAAGTACACAGTCTTTTCTTTCAGCAAATGGTTTCAATACGCTAGATGACCCAATTGAAGATTTCATAAGGTATCTTATTGGAGGAAGTATTTTATATTACCCTCAACTCTCATCCATAAGTTCATATCAACTGTATGTGGAGGTGGTTTGTGAAGAGTTGGGTTGGCTTCCTTTTTATCCCGGAATCATCAGCACTACAAAACAGTTACATATGCATAAAAATAAACAAGAATGTCCTCCAAATGATGAAGTAGCGCCTCAAGCACTAGATGTTTGTTCTCATTGGATGGAGAGCTTTATAAAGTATAGTACATGGCTGGAGAGCCCTTCTAATGTAAAAGCAGCTAAATTTTTATCAAAAGGGCACAAGAAGTTGGTGGAGTGCATGGAAGAGCTTGGGATGATAAAGGATAAGACATTGGAGGTTAATACCAAGGAATCTGTTGAGAGACAAAGATCTACACTTCACTCAACTGCAAAAGTATCGGATTCTTTTAATGAGGCTTTGAAAAAAGTTGAAGAAGCTATGCTAAGACTGGAGAATTTGCTTCAAGAATTGTATGTATCAAGTACTAGTTCTGGAAAAGAGCATTTGAACATCTGTTCTGATCTGGAAAAAATCCGTTAA
>Glyma03g35675.1 sequence type=predicted peptide gene model=Glyma03g35675 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTEITGNLKDMLVDVLSISRAYDTIKYVGLHREFLVHFGPQAAACGEKVEQGSEGVAFWVNIAQRQLQQAIDKERIWSRLTTSESIEVLEKDLAIFGFFVALGRSTQSFLSANGFNTLDDPIEDFIRYLIGGSILYYPQLSSISSYQLYVEVVCEELGWLPFYPGIISTTKQLHMHKNKQECPPNDEVAPQALDVCSHWMESFIKYSTWLESPSNVKAAKFLSKGHKKLVECMEELGMIKDKTLEVNTKESVERQRSTLHSTAKVSDSFNEALKKVEEAMLRLENLLQELYVSSTSSGKEHLNICSDLEKIR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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