SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g35620

Feature Type:gene_model
Chromosome:Gm03
Start:42773225
stop:42776030
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g35620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36130AT Annotation by Michelle Graham. TAIR10: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr2:15166863-15168259 FORWARD LENGTH=164 SoyBaseE_val: 2.00E-106ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
KOG0881 KOG Cyclophilin type peptidyl-prolyl cis-trans isomerase JGI ISS
PTHR11071Panther CYCLOPHILIN JGI ISS
PTHR11071:SF41Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 1, PPIL1 JGI ISS
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI ISS
UniRef100_C6TF56UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=C6TF56_SOYBN SoyBaseE_val: 6.00E-118ISS
UniRef100_C6TF56UniRef Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=C6TF56_SOYBN SoyBaseE_val: 6.00E-118ISS

Expression Patterns of Glyma03g35620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35620
ParalogEvidenceComments
Glyma19g38260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g198200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g35620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g35620
>Glyma03g35620.1   sequence type=CDS   gene model=Glyma03g35620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGCAAGCGCAGAAGGTGGTGCTCCGGAGGTTACTCTGGAAACTTCCATGGGTTCTTTCACCGTTGAGCTGTACTACAAGCATGCGCCGAGGACTTGTAGGAACTTCATTGAACTGTCTCGCCGAGGTTACTACGACAACGTTAAATTCCACAGGATCATCAAGGACTTCATAGTACAAGGTGGGGATCCCACTGGAACAGGAAGGGGAGGAGAATCCATATATGGTGCAAAGTTTGAAGATGAGATAAAACGAGAGTTGAAGCACACTGGAGCTGGAATCTTATCCATGGCAAATGCTGGCCCAAATACCAATGGTAGTCAGTTCTTTATTACTCTGGCACCATGCCCCTCTCTCGATGGAAAACACACAATATTTGGAAGAGTGTGTAGGGGGATGGAAATTATCAAAAGACTTGGCAGCGTCCAAACAGATAACAACGACAGGCCCATCCATGACGTTAAGATACTACGTACCTCAGTCAAGGATTAG
Predicted protein sequences of Glyma03g35620
>Glyma03g35620.1   sequence type=predicted peptide   gene model=Glyma03g35620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKRELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRTSVKD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo