SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11530 | AT | Annotation by Michelle Graham. TAIR10: Vacuolar protein sorting 55 (VPS55) family protein | chr3:3628801-3629885 REVERSE LENGTH=113 | SoyBase | E_val: 1.00E-69 | ISS |
| GO:0006661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| KOG2174 | KOG | Leptin receptor gene-related protein | JGI | ISS | |
| PTHR12050 | Panther | LEPTIN RECEPTOR-RELATED | JGI | ISS | |
| PF04133 | PFAM | Vacuolar protein sorting 55 | JGI | ISS | |
| UniRef100_Q93Z28 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT3g11530/F24K9_21 n=1 Tax=Arabidopsis thaliana RepID=Q93Z28_ARATH | SoyBase | E_val: 3.00E-71 | ISS |
| UniRef100_UPI0002337297 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337297 related cluster n=1 Tax=unknown RepID=UPI0002337297 | SoyBase | E_val: 7.00E-152 | ISS |
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Glyma03g35591 not represented in the dataset |
Glyma03g35591 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g38220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g35591.1 sequence type=CDS gene model=Glyma03g35591 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCATCCACTCAGCCACATGGAACACCAATTAGCATTGCCTTTGCCTTTGCATCACTTTCTTCTCGTGCAATGATCTTTCTTTTGAAAGCGTCCTTGAACCATGGTTTGAAGTCCCTCTTTAACCTTGAGGACAAGGTTGATTTTCCAGCGAAGGTCGAAGAAGCAAAAAGGGGGTGGGTCAAAATTCCGCCGGAGAAAATCTTTGTTCGGTGTTTGCAATCGGGAGAGAGAGCAAGGTCCCTTCTCAAGGATGGCGATGACTGTACACGCCTTGCTGGGTTGGCTTTTATGTTTTCAGCTAGCATTTTGCTTCAGATTCTGGCATGTGCAATATATAACAATTGGTGGCCAATGTTATCAGCTCTGATGTATGTGCTGGTTCCTATGCCTTGCTTATTCTTTGGAGGTGGATCCACTCAATTTCTAATGAGCCGTGATGGTGGTGGTTGGATAGATGCTGCAAAATTTTTGACTGGAGCATCAGCTGTTGGGAGCATAGCCATTCCTATAATCCTCAAGCACGCTCATATGATTGAGACAGGCGCGATGCTCATTGAACTTGTATCGTTCTTCATTTTTATATGTACTGTTTTATGTTTCCACCAAGCCGGCCTTGATGATGATTGGTAA
>Glyma03g35591.1 sequence type=predicted peptide gene model=Glyma03g35591 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSTQPHGTPISIAFAFASLSSRAMIFLLKASLNHGLKSLFNLEDKVDFPAKVEEAKRGWVKIPPEKIFVRCLQSGERARSLLKDGDDCTRLAGLAFMFSASILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLMSRDGGGWIDAAKFLTGASAVGSIAIPIILKHAHMIETGAMLIELVSFFIFICTVLCFHQAGLDDDW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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