Glyma03g35550 - SoyBase

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Report for Sequence Feature Glyma03g35550

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42717053
stop:	42721202
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52570	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr3:19501145-19502795 FORWARD LENGTH=335	SoyBase	E_val: 2.00E-121	ISS
GO:0006505	GO-bp	Annotation by Michelle Graham. GO Biological Process: GPI anchor metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0031227	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
KOG2382	KOG	Predicted alpha/beta hydrolase	JGI		ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF81	Panther	ABHYDROLASE DOMAIN-CONTAINING PROTEIN 11-RELATED	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9SWH4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Valacyclovir hydrolase, putative n=1 Tax=Ricinus communis RepID=B9SWH4_RICCO	SoyBase	E_val: 5.00E-133	ISS
UniRef100_I1JQ43	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JQ43_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g35550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35550

Paralog	Evidence	Comments
Glyma19g38180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g197700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g35550

Limit To All Plant Sequences

>Glyma03g35550.2   sequence type=transcript   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTACATTCACTATATTATTTAGCTCAATTCCTTGGTTCCATTTCATTGGTCTAAGGTATGCCACAGGCAGAAGAACTAAAAGCCCAGTCAAAGTAAAAAGTAAAGCAGAAAATGGCGGCATCTCTGAGATGCAGAAACAGCTCCTCCCTCCTCCTAACTCGCTTCCTCAACTCAGCGAGTCGAAGGTGGTTGCAAACCGTAGCCTACGAAGAACTGCGAGCTCACCCGGACAAACCCTACACTTCAACGGCGGTTTTCATCCATGGCTTTTTGGGATCCTCCAGAAACTGGAGATCTTTCTCTCGCAACCTCTTGGCTTCTCTCTCCAACTCCTCTCCCTCTTCCAATTGGAGGACGGTGATGTTGGACATGAGGAACCACGGGAAATCGACGGAGAGGGAACTGAATCCGCCTCATAATATGGAAAATGCGGCCAAAGATTTGGTCGATTTGGTGAAGGCTGAAGGCTGGTCTTGGCCTGAGGTTGTCATAGGGCATTCCATGGGTGGAAAGGTGGCTTTGCAGTTTGCTGAGAGTTGTAGCCGTGGTGACTATGGCCATTCTGCTTTGTTGCCTAAACAGCTCTGGGTATTGGACTCTGTCCCTGGAGAAGTGAACCAAGAAAACAGTAATGATGAAGTCCGAAATGTTTTAGCAACCTTGCAAAGTTTACCATCCCAATTCTCATCTCGGAAGTGGCTTGTGGGTCATCTGATGGGACTTGGTTACCCTAAGGCACTGTCAGACTGGATAGGCACCAACCTGAAAAAAGTTGGTGATCATGAGACATGGATATTTGATATTCAAAATGCTAAGGAGATGTTTGATTCTTACTGCACAAAAGTAACAATCCCCAACGTTACAATTCTACAGTGAAAAGTCCTATTGGAATCTATTGGAGAACCCTCCCAAGGGTATGGAAATAGTAATTGTGCGTGCTGAAAAAAGTGATAGATGGGACGAAGACGCTATTGACAGGATCCAGAAACTAGCCAGTCAGGGAGGATCTGACTCTCCTGGGAAAGCTTCCTTCTTTGTTCTTCCCAATGCTGGTCATTGGGTTCACGTAGATAACCCAAAGGGACTTCTTGAGATCGTGGCTTCCAAGATAGCATCCCTTTAGTTCTGCTTTAGTTGAACTATGGGGCATCCATCGTTGAAAATTGTTGCGTCCAGAGTCGAAATTCTTACATTATTTATGTACAATTTATCAACTACCAAATAATTTATTTTACATACAATTCATTGTAATGCGAATATCTTTGCGCAGATTTTGAAACAACCACTACACAACTAAATAAAACCCATAAGGACTCATAGTTGTCATGTCCACTTACTAAGTCTTATTTTAGATGTGTTTAATTGTTTAGATATGTGCATGCATGTGTTGCGCATGAGTACGTGTTTATACCATTTAATTGGTATGAAAATAAACTTCTTTCAGCTACTACAGTGTTCTTCAATAAAAGAATTGCTTAATTGTAACTTTGGTG

>Glyma03g35550.3   sequence type=transcript   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGGTCTAAGGTATGCCACAGGCAGAAGAACTAAAAGCCCAGTCAAAGTAAAAAGTAAAGCAGAAAATGGCGGCATCTCTGAGATGCAGAAACAGCTCCTCCCTCCTCCTAACTCGCTTCCTCAACTCAGCGAGTCGAAGGTGGTTGCAAACCGTAGCCTACGAAGAACTGCGAGCTCACCCGGACAAACCCTACACTTCAACGGCGGTTTTCATCCATGGCTTTTTGGGATCCTCCAGAAACTGGAGATCTTTCTCTCGCAACCTCTTGGCTTCTCTCTCCAACTCCTCTCCCTCTTCCAATTGGAGGACGGTGATGTTGGACATGAGGAACCACGGGAAATCGACGGAGAGGGAACTGAATCCGCCTCATAATATGGAAAATGCGGCCAAAGATTTGGTCGATTTGGTGAAGGCTGAAGGCTGGTCTTGGCCTGAGGTTGTCATAGGGCATTCCATGGGTGGAAAGGTGGCTTTGCAGTTTGCTGAGAGTTGTAGCCGTGGTGACTATGGCCATTCTGCTTTGTTGCCTAAACAGGTTTTTCTTCTCTATTGCAATGGATAGTTATAAATTCAACGGTCGAATTCA

>Glyma03g35550.4   sequence type=transcript   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATAGGTTACATTCTGTTATGACAGTTGTCAGTTAGTTAGAACCTGTTAGTATTGTTAGCTTCCAAGAGAAGTCTAACACCACATGTACAAATACTAGACTCAGAACAGAGAATAAATTGACTTGTATAAAAAATTTCAGTTTAATAAATTCTATCACCTTCTGTCTGAAATTCTGCAATTTTCAAGAACCTTGTATTATGGATTTTAATTTTAAACATTTGTACTATAGGCCTAATGTCCGCTGTATGTTTCTCTTTTTATCCCTCCTGAAGAACAGCTCTGGGTATTGGACTCTGTCCCTGGAGAAGTGAACCAAGAAAACAGTAATGATGAAGTCCGAAATGTTTTAGCAACCTTGCAAAGTTTACCATCCCAATTCTCATCTCGGAAGTGGCTTGTGGGTCATCTGATGGGACTTGGTTACCCTAAGGCACTGTCAGACTGGATAGGCACCAACCTGAAAAAAGTTGGTGATCATGAGACATGGATATTTGATATTCAAAATGCTAAGGAGATGTTTGATTCTTACTGTGAAAAGTCCTATTGGAATCTATTGGAGAACCCTCCCAAGGGTATGGAAATAGTAATTGTGCGTGCTGAAAAAAGTGATAGATGGGACGAAGACGCTATTGACAGGATCCAGAAACTAGCCAGTCAGGGAGGATCTGACTCTCCTGGGAAAGCTTCCTTCTTTGTTCTTCCCAATGCTGGTCATTGGGTTCACGTAGATAACCCAAAGGGACTTCTTGAGATCGTGGCTTCCAAGATAGCATCCCTTTAGTTCTGCTTTAGTTGAACTATGGGGCATCCATCGTTGAAAATTGTTGCGTCCAGAGTCGAAATTCTTACATTATTTATGTACAATTTATCAACTACCAAATAATTTATTTTACATACAATTCATTGTAATGCGAATATCTTTGCGCAGATTTTGAAACAACCACTACACAACTAAATAAAACCCATAAGGACTCATAGTTGTCATGTCCACTTACTAA

Coding sequences of Glyma03g35550

Limit To All Plant Sequences

>Glyma03g35550.1   sequence type=CDS   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCATCTCTGAGATGCAGAAACAGCTCCTCCCTCCTCCTAACTCGCTTCCTCAACTCAGCGAGTCGAAGGTGGTTGCAAACCGTAGCCTACGAAGAACTGCGAGCTCACCCGGACAAACCCTACACTTCAACGGCGGTTTTCATCCATGGCTTTTTGGGATCCTCCAGAAACTGGAGATCTTTCTCTCGCAACCTCTTGGCTTCTCTCTCCAACTCCTCTCCCTCTTCCAATTGGAGGACGGTGATGTTGGACATGAGGAACCACGGGAAATCGACGGAGAGGGAACTGAATCCGCCTCATAATATGGAAAATGCGGCCAAAGATTTGGTCGATTTGGTGAAGGCTGAAGGCTGGTCTTGGCCTGAGGTTGTCATAGGGCATTCCATGGGTGGAAAGGTGGCTTTGCAGTTTGCTGAGAGTTGTAGCCGTGGTGACTATGGCCATTCTGCTTTGTTGCCTAAACAGCTCTGGGTATTGGACTCTGTCCCTGGAGAAGTGAACCAAGAAAACAGTAATGATGAAGTCCGAAATGTTTTAGCAACCTTGCAAAGTTTACCATCCCAATTCTCATCTCGGAAGTGGCTTGTGGGTCATCTGATGGGACTTGGTTACCCTAAGGCACTGTCAGACTGGATAGGCACCAACCTGAAAAAAGTTGGTGATCATGAGACATGGATATTTGATATTCAAAATGCTAAGGAGATGTTTGATTCTTACTGTGAAAAGTCCTATTGGAATCTATTGGAGAACCCTCCCAAGGGTATGGAAATAGTAATTGTGCGTGCTGAAAAAAGTGATAGATGGGACGAAGACGCTATTGACAGGATCCAGAAACTAGCCAGTCAGGGAGGATCTGACTCTCCTGGGAAAGCTTCCTTCTTTGTTCTTCCCAATGCTGGTCATTGGGTTCACGTAGATAACCCAAAGGGACTTCTTGAGATCGTGGCTTCCAAGATAGCATCCCTTTAG

>Glyma03g35550.2   sequence type=CDS   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCATCTCTGAGATGCAGAAACAGCTCCTCCCTCCTCCTAACTCGCTTCCTCAACTCAGCGAGTCGAAGGTGGTTGCAAACCGTAGCCTACGAAGAACTGCGAGCTCACCCGGACAAACCCTACACTTCAACGGCGGTTTTCATCCATGGCTTTTTGGGATCCTCCAGAAACTGGAGATCTTTCTCTCGCAACCTCTTGGCTTCTCTCTCCAACTCCTCTCCCTCTTCCAATTGGAGGACGGTGATGTTGGACATGAGGAACCACGGGAAATCGACGGAGAGGGAACTGAATCCGCCTCATAATATGGAAAATGCGGCCAAAGATTTGGTCGATTTGGTGAAGGCTGAAGGCTGGTCTTGGCCTGAGGTTGTCATAGGGCATTCCATGGGTGGAAAGGTGGCTTTGCAGTTTGCTGAGAGTTGTAGCCGTGGTGACTATGGCCATTCTGCTTTGTTGCCTAAACAGCTCTGGGTATTGGACTCTGTCCCTGGAGAAGTGAACCAAGAAAACAGTAATGATGAAGTCCGAAATGTTTTAGCAACCTTGCAAAGTTTACCATCCCAATTCTCATCTCGGAAGTGGCTTGTGGGTCATCTGATGGGACTTGGTTACCCTAAGGCACTGTCAGACTGGATAGGCACCAACCTGAAAAAAGTTGGTGATCATGAGACATGGATATTTGATATTCAAAATGCTAAGGAGATGTTTGATTCTTACTGCACAAAAGTAACAATCCCCAACGTTACAATTCTACAGTGA

>Glyma03g35550.3   sequence type=CDS   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCATCTCTGAGATGCAGAAACAGCTCCTCCCTCCTCCTAACTCGCTTCCTCAACTCAGCGAGTCGAAGGTGGTTGCAAACCGTAGCCTACGAAGAACTGCGAGCTCACCCGGACAAACCCTACACTTCAACGGCGGTTTTCATCCATGGCTTTTTGGGATCCTCCAGAAACTGGAGATCTTTCTCTCGCAACCTCTTGGCTTCTCTCTCCAACTCCTCTCCCTCTTCCAATTGGAGGACGGTGATGTTGGACATGAGGAACCACGGGAAATCGACGGAGAGGGAACTGAATCCGCCTCATAATATGGAAAATGCGGCCAAAGATTTGGTCGATTTGGTGAAGGCTGAAGGCTGGTCTTGGCCTGAGGTTGTCATAGGGCATTCCATGGGTGGAAAGGTGGCTTTGCAGTTTGCTGAGAGTTGTAGCCGTGGTGACTATGGCCATTCTGCTTTGTTGCCTAAACAGGTTTTTCTTCTCTATTGCAATGGATAG

>Glyma03g35550.4   sequence type=CDS   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACTTGGTTACCCTAAGGCACTGTCAGACTGGATAGGCACCAACCTGAAAAAAGTTGGTGATCATGAGACATGGATATTTGATATTCAAAATGCTAAGGAGATGTTTGATTCTTACTGTGAAAAGTCCTATTGGAATCTATTGGAGAACCCTCCCAAGGGTATGGAAATAGTAATTGTGCGTGCTGAAAAAAGTGATAGATGGGACGAAGACGCTATTGACAGGATCCAGAAACTAGCCAGTCAGGGAGGATCTGACTCTCCTGGGAAAGCTTCCTTCTTTGTTCTTCCCAATGCTGGTCATTGGGTTCACGTAGATAACCCAAAGGGACTTCTTGAGATCGTGGCTTCCAAGATAGCATCCCTTTAG

Predicted protein sequences of Glyma03g35550

Limit To All Plant Sequences

>Glyma03g35550.1   sequence type=predicted peptide   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASLRCRNSSSLLLTRFLNSASRRWLQTVAYEELRAHPDKPYTSTAVFIHGFLGSSRNWRSFSRNLLASLSNSSPSSNWRTVMLDMRNHGKSTERELNPPHNMENAAKDLVDLVKAEGWSWPEVVIGHSMGGKVALQFAESCSRGDYGHSALLPKQLWVLDSVPGEVNQENSNDEVRNVLATLQSLPSQFSSRKWLVGHLMGLGYPKALSDWIGTNLKKVGDHETWIFDIQNAKEMFDSYCEKSYWNLLENPPKGMEIVIVRAEKSDRWDEDAIDRIQKLASQGGSDSPGKASFFVLPNAGHWVHVDNPKGLLEIVASKIASL*

>Glyma03g35550.2   sequence type=predicted peptide   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASLRCRNSSSLLLTRFLNSASRRWLQTVAYEELRAHPDKPYTSTAVFIHGFLGSSRNWRSFSRNLLASLSNSSPSSNWRTVMLDMRNHGKSTERELNPPHNMENAAKDLVDLVKAEGWSWPEVVIGHSMGGKVALQFAESCSRGDYGHSALLPKQLWVLDSVPGEVNQENSNDEVRNVLATLQSLPSQFSSRKWLVGHLMGLGYPKALSDWIGTNLKKVGDHETWIFDIQNAKEMFDSYCTKVTIPNVTILQ*

>Glyma03g35550.3   sequence type=predicted peptide   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASLRCRNSSSLLLTRFLNSASRRWLQTVAYEELRAHPDKPYTSTAVFIHGFLGSSRNWRSFSRNLLASLSNSSPSSNWRTVMLDMRNHGKSTERELNPPHNMENAAKDLVDLVKAEGWSWPEVVIGHSMGGKVALQFAESCSRGDYGHSALLPKQVFLLYCNG*

>Glyma03g35550.4   sequence type=predicted peptide   gene model=Glyma03g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLGYPKALSDWIGTNLKKVGDHETWIFDIQNAKEMFDSYCEKSYWNLLENPPKGMEIVIVRAEKSDRWDEDAIDRIQKLASQGGSDSPGKASFFVLPNAGHWVHVDNPKGLLEIVASKIASL*

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