Glyma03g35510 - SoyBase

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Report for Sequence Feature Glyma03g35510

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42682775
stop:	42689186
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36200	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:15180078-15185189 REVERSE LENGTH=1009	SoyBase	E_val: 0	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0007129	GO-bp	Annotation by Michelle Graham. GO Biological Process: synapsis	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010564	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0243	KOG	Kinesin-like protein	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF152	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
UniRef100_B9SWG6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bipolar kinesin KRP-130, putative n=1 Tax=Ricinus communis RepID=B9SWG6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339795	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339795 related cluster n=1 Tax=unknown RepID=UPI0002339795	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g35510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35510

Paralog	Evidence	Comments
Glyma19g38150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g197300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g35510

Limit To All Plant Sequences

>Glyma03g35510.1   sequence type=CDS   gene model=Glyma03g35510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCGAAAGAGAAGGGCGTCAACGTTCAGGTCCTCCTCCGTTGCAGGCCGTTTAGCGACGAAGAGTTACGAAGCAACGTGCCACAAGTCGTGACTTGCAATGAATACAATCGAGAAGTGGCCGTGTCTCAGAGCATCGCCGGCAAGCACATTGACAGGGTTTTCACCTTCGATAAGGTTTTTGGTCCTTCTGCACAGCAAAGGGATCTTTATGACCAAGCTGTTATTCCGATAGTTAATGAAGTTCTAGAGGGCTTTAATTGTACTATATTCGCGTATGGTCAAACTGGTACGGGAAAAACCTACACCATGGAAGGGGAATGCAAAAGGGCCAAGAGTGGTCCCAATGGAGAGTTGCCTACAGGAGCTGGAGTTATTCCTCGGGCTGTCAAGCAGATTTTTGACACACTTGAGAGCCAGAATGCTGAGTACAGTGTGAAGGTCACTTTTTTGGAATTGTATAATGAAGAAATCACTGATTTGCTTGCCCCGGAGGAGCTTTCAAAGGCTTCTTTGGAGGAGAAGCAGAAAAAGCAGCTGCCTCTCATGGAGGATGGTAAAGGTGGAGTTCTAGTAAGAGGCTTGGAGGAAGAGATTGTGACGAGTGCCGGTGAGATTTTTACTCTTCTGGAGAGAGGGTCTTCTAAACGACGAACTGCAGAAACTTTGTTGAACAAGCAGTCAAGTCGATCGCATTCGTTGTTTTCTATTACAATCCACATCAAAGAAGCAACCCCAGAAGGTGAAGAACTGATAAAGTGTGGTAAACTTAATTTGGTGGATCTGGCTGGGTCAGAAAATATATCTCGTTCTGGTGCTAGGGAGGGTCGTGCCAGGGAAGCAGGGGAAATTAACAAAAGTTTGCTTACTTTAGGGCGAGTGATCAATGCACTAGTGGAGCACCTGGGTCACATCCCTTACAGGGATAGTAAATTGACGCGTTTACTGCGTGATTCACTTGGAGGAAGAACGAAGACATGCATCATAGCGACAGTGTCTCCTGCAGTTCATTGCTTAGAAGAAACTTTAAGCACGCTGGATTATGCACACAGGGCAAAGCACATAAAAAATAAGCCTGAGGTTAACCAAAAAATGATGAAATCGACACTTATCAAAGATCTTTATGGTGAAATTGAACGCCTTAAGGCAGAGGTTTATGCTACACGGGAGAAAAATGGAGTATATATTCCAAAGGAAAGATACTATCAGGAGGAGACCGAAAAAAAGGCCATGTCAGATCAAATTGAGCAGATGGGCGTCACAATAGAAACTCAACAGAAGCAACTTGAGGATTTGCAAAACAAATACGTCGACCAAATTCGGCAGTGTTCTGATTTGAGCAACAAACTTGATAGTACTCAGAAAAACTTGAACAAGACTAGCAAGTTGCTTGCCAACACAGAGGAAGAATTGAAGAAATGCCACTATACCCTGAAAGAAAAAGACTTCATCATTTCCGAGCAGAGAAAAGCAGAAAATGCTCTGGCTCATCAAGCATGTGTTTTACGAGCTGATTTGGAGAAAGCTCATCAGGATAATGCTTCATTATTTTTGAAAATTGGTAGGGAAGATAAATTAAACTCAGATAACAGAGCTGTAGTGAACAATTTCCAAGCGGAGCTTGCTCAGCAGGTTGGTTCACTTTGCAATACTGTTGCAACATCGTTGTCTGAACAGAATGAACATCTAGAAGGTGTGAAGAAGCTCTGTCATTCTTTTTTGGACCTTCATGATAAGGCGGCTGTTGATTTGAAAAGGAAAGTGACATCTCTGAGGACCTTGTATATATCTCATTTTGAGGCAGTGGAAAATGTTGTACGCTTGCATAAGGCGGGCTCTGATGCTAACTTGGAGGAACTATCATCAGTTATATCCTCTAATGGTCATTCTATTGAGGAATTTCTTGCATCTGAGGCCACTGAAGCTGGTTCAATATTTGACGATCTTCAGAGAACCCTTTCAACTCAGCAGGATGAACTGGAACTATTTGCAGGGAAACTACGCAGTAGATTCAATCTCAGTCTTGAACAAATAAAAGATATCTCTGATCGCTCTCAAGAATTTGTGGATAAGCTATTTGAAGAATCAAAAAAGCTTGAAGACTATGCATCACAGGCTGACCAAATGCAAATGAAGAGCATTGATGAGTTTAAGAAAGCATATGAGGAGCAATCAAAATCTGATACAGAGAAACTTATTGCCAATATGACTAGTTTAGTTTCTGATCACATTCGGCGACAAATGGATCTGGTAGACTCAAAGCTTGTTGATCTTAGAGAAAGTGGCATCAAGAACAAGTCCTTCTTAGATGGACATGTGTCATCAATGGGAGATATTGTGACCAATGCAAAAAGGAAATGGCAGGCCTTTTGCGTGCAAGCAGAAAAGGATGCAAAAGACACTGCTGATGATTCTGCCGCAAAGCATTGTCGTATGGAGAAACTCATACAGCGGGGTGTTCATACTGCTCAATCGGCTTTCGAACATACAAAGAAGACACATGAGGCTGTAAATGAGATGGGGACCAAACATATTTCAGCAACAGAGTCAATTGTCAGGAATGCTACTGATAACAATGTGCAACATGTCGTTGAGGTCCATTCTGCACGAGTTACAGCAGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTAGATGTCACGTCTGCACAGGAGAGGGAATCCATATCTGGCGTATTAAATGTGGTGAGAACTCATGCAAATACACTTGAGACGCTACGAGAGGATCACAATGGCCAAGCTACTTCAATTGAACACACAACAAGCAAAACTTTCCAACAGCAGTACAGGGACTATGAGGCTAGCGGCACAACACCTATAAGATGTGAGCCTGATGTTCCGACAAAGGGGACAATAGAGTCTCTTCGGTCGTTGCCAATGGAAGCCCTTCTTGAGGAATTCCGGGAAAATAATCCATATGAATCTAATGATGTAAAGGAGTTGAAACCATCGCTTATTCCACGATCGCCTCTTACTCAGCTGAACTAA

Predicted protein sequences of Glyma03g35510

Limit To All Plant Sequences

>Glyma03g35510.1   sequence type=predicted peptide   gene model=Glyma03g35510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKEKGVNVQVLLRCRPFSDEELRSNVPQVVTCNEYNREVAVSQSIAGKHIDRVFTFDKVFGPSAQQRDLYDQAVIPIVNEVLEGFNCTIFAYGQTGTGKTYTMEGECKRAKSGPNGELPTGAGVIPRAVKQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPEELSKASLEEKQKKQLPLMEDGKGGVLVRGLEEEIVTSAGEIFTLLERGSSKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKHIKNKPEVNQKMMKSTLIKDLYGEIERLKAEVYATREKNGVYIPKERYYQEETEKKAMSDQIEQMGVTIETQQKQLEDLQNKYVDQIRQCSDLSNKLDSTQKNLNKTSKLLANTEEELKKCHYTLKEKDFIISEQRKAENALAHQACVLRADLEKAHQDNASLFLKIGREDKLNSDNRAVVNNFQAELAQQVGSLCNTVATSLSEQNEHLEGVKKLCHSFLDLHDKAAVDLKRKVTSLRTLYISHFEAVENVVRLHKAGSDANLEELSSVISSNGHSIEEFLASEATEAGSIFDDLQRTLSTQQDELELFAGKLRSRFNLSLEQIKDISDRSQEFVDKLFEESKKLEDYASQADQMQMKSIDEFKKAYEEQSKSDTEKLIANMTSLVSDHIRRQMDLVDSKLVDLRESGIKNKSFLDGHVSSMGDIVTNAKRKWQAFCVQAEKDAKDTADDSAAKHCRMEKLIQRGVHTAQSAFEHTKKTHEAVNEMGTKHISATESIVRNATDNNVQHVVEVHSARVTAEEDVAKNSEDLLEQLDVTSAQERESISGVLNVVRTHANTLETLREDHNGQATSIEHTTSKTFQQQYRDYEASGTTPIRCEPDVPTKGTIESLRSLPMEALLEEFRENNPYESNDVKELKPSLIPRSPLTQLN*

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