Glyma03g35490 - SoyBase

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Report for Sequence Feature Glyma03g35490

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42670814
stop:	42672273
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23930	AT	Annotation by Michelle Graham. TAIR10: probable small nuclear ribonucleoprotein G \| chr2:10182353-10183026 FORWARD LENGTH=80	SoyBase	E_val: 4.00E-48	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005732	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1780	KOG	Small Nuclear ribonucleoprotein G	JGI		ISS
PTHR10553	Panther	SMALL NUCLEAR RIBONUCLEOPROTEIN	JGI		ISS
PF01423	PFAM	LSM domain	JGI		ISS
UniRef100_B9SWG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Small nuclear ribonucleoprotein G, putative n=1 Tax=Ricinus communis RepID=B9SWG3_RICCO	SoyBase	E_val: 1.00E-46	ISS
UniRef100_C6SVH9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVH9_SOYBN	SoyBase	E_val: 9.00E-49	ISS

Expression Patterns of Glyma03g35490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35490

Paralog	Evidence	Comments
Glyma19g38130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g197100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g35490

Limit To All Plant Sequences

>Glyma03g35490.1   sequence type=CDS   gene model=Glyma03g35490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAGTACATGGACAAGAAGCTTCAGATCAAGCTGAATGCAAATCGCATGGTTGTTGGTACTCTCCGTGGCTTCGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCTGTGAACAGGACTTGA

Predicted protein sequences of Glyma03g35490

Limit To All Plant Sequences

>Glyma03g35490.1   sequence type=predicted peptide   gene model=Glyma03g35490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRT*

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