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Report for Sequence Feature Glyma03g35470

Feature Type:gene_model
Chromosome:Gm03
Start:42653393
stop:42660311
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g35470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03940AT Annotation by Michelle Graham. TAIR10: chloroplast signal recognition particle 54 kDa subunit | chr5:1060265-1063257 REVERSE LENGTH=564 SoyBaseE_val: 0ISS
GO:0006614GO-bp Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane SoyBaseN/AISS
GO:0006617GO-bp Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0045038GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast thylakoid membrane SoyBaseN/AISS
GO:0051607GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to virus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005786GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, endoplasmic reticulum targeting SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0048500GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle SoyBaseN/AISS
GO:0080085GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, chloroplast targeting SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003729GO-mf Annotation by Michelle Graham. GO Molecular Function: mRNA binding SoyBaseN/AISS
GO:0005048GO-mf Annotation by Michelle Graham. GO Molecular Function: signal sequence binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
GO:0008312GO-mf Annotation by Michelle Graham. GO Molecular Function: 7S RNA binding SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG0780 KOG Signal recognition particle, subunit Srp54 JGI ISS
PTHR11564Panther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS JGI ISS
PTHR11564:SF7Panther SIGNAL RECOGNITION PARTICLE PROTEIN JGI ISS
PF00448PFAM SRP54-type protein, GTPase domain JGI ISS
PF02881PFAM SRP54-type protein, helical bundle domain JGI ISS
PF02978PFAM Signal peptide binding domain JGI ISS
UniRef100_G7KQW9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle 54 kDa protein n=2 Tax=Medicago truncatula RepID=G7KQW9_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JQ35UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ35_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g35470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35470
ParalogEvidenceComments
Glyma19g38110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g196900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g35470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g35470
>Glyma03g35470.2   sequence type=CDS   gene model=Glyma03g35470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCGTAACAGGCTCCCACCATTTTTCCACTCTCTCCCTTTCTTTCTCTCACAACAAAACCTTGCGCTCTTCTTCTGCCAAATCAATCAGGCTTTCCTCTCCTTCGACCAACGCTTCCTTATCTTCCAGAAACTGGTTCGCGAAAGAGGTATGGGGTTGGGTGAACTCCAACTCCAAAGGCGTCGCCGTGAGAAGGTACACACGCGGAGTGGTGGTCAGGGCTGAAATGTTCGGCCAGTTAACAAGTGGCCTTGAGACTGCATGGAACAAACTCAAAGGAGAAGAGGTTTTGTCTAAGGAGAACATTGTGGAACCTATGCGGGATATCAGGAGAGCTCTCTTAGAAGCTGATGTTAGTCTTCCTGTTGTCAGAAGGTTTGTGCAGTCTGTCAGTGACCAGGCTGTGGGTGTTGGTGTCATTCGTGGAGTGAGACCAGATCAGCAATTGGTTAAGATTGTACATGAGGAACTTGTACAATTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTTCAGGGAGTTGGGAAGACAACTGTTTGCGCAAAGTTGGCAAATTATCTCAAGAAACAGGGAAAAAGTTGCATGCTAGTTGCTGGGGATGTTTACAGACCTGCTGCTATTGACCAGCTTGCTATTTTGGGAAAACAGGTGGATGTGCCTGTCTATACAGCAGGTACTGATGTTAAACCTTCAGAAATTGCCAAACAAGGTTTAGAAGAGGCAAAAAAGAAGAAAATTGATGTTGTTATTGTTGATACTGCTGGTAGGCTGCAGATTGACAAGACAATGATGGATGAGTTAAAAGAAGTGAAAAAGGCATTGAATCCAACAGAAGTGTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCCGCAGCGTTGGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACAAAGCTTGATGGCGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCCGGAAAGCCAATTAAACTTGTAGGACGGGGGGAACGCATGGAGGATCTTGAACCTTTCTACCCTGATCGGATGGCAGGACGCATACTAGGAATGGGAGATGTTCTTTCTTTTGTAGAGAAGGCACAACAAGTTATGCGTCAAGAAGATGCTGAAGAATTGCAAAAGAAGATTATGAGTGCAAAGTTTGACTTCAATGATTTTCTAAAGCAAACCCGTACTGTTGCAAAAATGGGTTCTGTCTCTCGTGTCATTGGAATGATTCCTGGTATGGGGAAGGTTACTCCTGCTCAAATTCGAGATGCAGAGAAGAATTTGCTGAACATGGAAGCAATGATAGAAGCGATGACCCCTGAGGAGAGGGAAAAGCCAGAACTGTTGGCAGAATCCCCTGTCAGGAGGAAAAGGGTTGCTCAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTTTTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAAGTGGATCACTTCCAACACTTAGTAATCTTGAGGAAGCGCTTAAAGCAGAGGAAAAGGCTCCTCCTGGCACTGCTAGGAGGAGGAAGAGATCGGAATCAAGGAGTGTATTTGGGGACTCAACACCAGCAAGGCCAAGTCCTCGTGGTTTTGGGAGCAAAAATTGA
Predicted protein sequences of Glyma03g35470
>Glyma03g35470.2   sequence type=predicted peptide   gene model=Glyma03g35470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAVTGSHHFSTLSLSFSHNKTLRSSSAKSIRLSSPSTNASLSSRNWFAKEVWGWVNSNSKGVAVRRYTRGVVVRAEMFGQLTSGLETAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVHEELVQLMGGEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLAILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELKEVKKALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQQVMRQEDAEELQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPAQIRDAEKNLLNMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLEEALKAEEKAPPGTARRRKRSESRSVFGDSTPARPSPRGFGSKN*






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