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Report for Sequence Feature Glyma03g35340

Feature Type:gene_model
Chromosome:Gm03
Start:42587771
stop:42590732
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g35340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52730AT Annotation by Michelle Graham. TAIR10: ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein | chr3:19543146-19544167 REVERSE LENGTH=72 SoyBaseE_val: 3.00E-35ISS
GO:0006122GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial electron transport, ubiquinol to cytochrome c SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005740GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial envelope SoyBaseN/AISS
GO:0005750GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex III SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008121GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquinol-cytochrome-c reductase activity SoyBaseN/AISS
KOG3494 KOG Ubiquinol cytochrome c oxidoreductase, subunit QCR9 JGI ISS
PTHR12980Panther UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT X JGI ISS
PF05365PFAM Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like JGI ISS
UniRef100_C6TBQ2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TBQ2_SOYBN SoyBaseE_val: 1.00E-43ISS
UniRef100_G7L638UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquinol-cytochrome c reductase complex protein n=1 Tax=Medicago truncatula RepID=G7L638_MEDTR SoyBaseE_val: 1.00E-36ISS

Expression Patterns of Glyma03g35340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35340
ParalogEvidenceComments
Glyma19g37961 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g195700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g35340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g35340
>Glyma03g35340.1   sequence type=CDS   gene model=Glyma03g35340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGTGTTTCTCGAAGAAGAGGTGGAGGCATTTTCGAAAGCCTCTACAAGGTCGTTATGCGTCGCAACTCTGTCTATGTTACCTTTGTCATCGCTGGCGCCTTCCTTGGAGAACGGGCTGTTGATTATGGAGTCCACAAGCTCTGGGAGGCAAATAATGTTGGGAAACGATATGAAGACATTCCTGTGCTAGGGCAAAGGCCGTCAGAATAG
Predicted protein sequences of Glyma03g35340
>Glyma03g35340.1   sequence type=predicted peptide   gene model=Glyma03g35340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESVSRRRGGGIFESLYKVVMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEANNVGKRYEDIPVLGQRPSE*






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