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Report for Sequence Feature Glyma03g35330

Feature Type:gene_model
Chromosome:Gm03
Start:42584134
stop:42585771
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g35330
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27060AT Annotation by Michelle Graham. TAIR10: Ferritin/ribonucleotide reductase-like family protein | chr3:9979971-9981057 REVERSE LENGTH=332 SoyBaseE_val: 0ISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009186GO-bp Annotation by Michelle Graham. GO Biological Process: deoxyribonucleoside diphosphate metabolic process SoyBaseN/AISS
GO:0012501GO-bp Annotation by Michelle Graham. GO Biological Process: programmed cell death SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004748GO-mf Annotation by Michelle Graham. GO Molecular Function: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0046914GO-mf Annotation by Michelle Graham. GO Molecular Function: transition metal ion binding SoyBaseN/AISS
KOG1567 KOG Ribonucleotide reductase, beta subunit JGI ISS
PTHR23409Panther RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN JGI ISS
PTHR23409:SF6Panther SUBFAMILY NOT NAMED JGI ISS
PF00268PFAM Ribonucleotide reductase, small chain JGI ISS
UniRef100_B9RBH6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribonucleoside-diphosphate reductase small chain, putative n=1 Tax=Ricinus communis RepID=B9RBH6_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JQ20UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ20_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g35330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g35330 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g195600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g35330
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g35330
>Glyma03g35330.1   sequence type=CDS   gene model=Glyma03g35330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTCGATACCAGAAGAACGACTCCTGACTCCGAACCCAGACCGGTTCTGCATGTTCCCAATCCAATACCCTCAAATCTGGGAAATGTATAAGAAAGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTGGACCTCTCGCAGGACCTCCGCCACTGGGCCACCCTCAGCGACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTAGAAAACCTCGCCGGCCGCTTCACCAAAGAAATCCAACTCCCGGAGGCCCGCGCTTTCTACGGCTTCCAAATCGCCATCGAAAATATCCACTCCGAAATGTACAGCCTCCTCTTAGAAACCTACATCAAAGACTCCACAGAAAAAAATCGTCTGTTTCGCGCCATAAACACCATCCCATGCATCACCAAAAAAGCCCAGTGGGCCCTCCGCTGGATCGATGCCTCAGAATCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGCGTCGAGGGAATATTCTTCTCCGGAAGCTTTTGCGCGATATTTTGGCTCAAGAAGCGTGGGTTAATGCCGGGGCTCACCTTCTCCAACGAACTCATCTCGCGAGATGAGGGGCTTCACTGCGACTTCGCGTGTCTCTTGTACTCGCTTCTCAGGAAGAAGCTTAGTGAGGAGCGCGTGAGGGAGATTGTGCGTGACGCGGTGGAGATTGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGTGCGTTGGTGGGGATGAACGGGGAGTTGATGAGTCGGTATATTGAGTTTGTTGCGGATCGGTTGCTGGATGCGCTTGGGTGTGGGAAGGTGTACGGTGCTCAGAATCCCTTTGATTGGATGGAGCTTATTTCGCTTCAGGGGAAAACTAACTTCTTTGAGAAGCGCGTTGGGGAGTACCAGAAGGCTTCTGTTATGTCTAGCTTGAATGGTAATGGAGGGGCGCATGTCTTCAAGATGGATGAGGATTTTTAA
Predicted protein sequences of Glyma03g35330
>Glyma03g35330.1   sequence type=predicted peptide   gene model=Glyma03g35330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSIPEERLLTPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWATLSDGERHFITHVLAFFAASDGIVLENLAGRFTKEIQLPEARAFYGFQIAIENIHSEMYSLLLETYIKDSTEKNRLFRAINTIPCITKKAQWALRWIDASESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKKLSEERVREIVRDAVEIEREFVCDALPCALVGMNGELMSRYIEFVADRLLDALGCGKVYGAQNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGAHVFKMDEDF*






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