SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26060 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr2:11102400-11105127 FORWARD LENGTH=352 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG0645 | KOG | WD40 repeat protein | JGI | ISS | |
| PTHR19920 | Panther | WD REPEAT CONTAINING PROTEIN | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_B9SRX4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SRX4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JQ18 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ18_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma03g35310 not represented in the dataset |
Glyma03g35310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g195400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g35310.1 sequence type=CDS gene model=Glyma03g35310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGAGTTGAAAGAGATTCAGAGACTCGAAGGCCACACCGATAAGGTTTGGAGCTTGGCCTGGAACCCGACCACCGGTCACGCCGGTATCCCACTCGTCTTCGCTTCTTGCAGCGGCGACAAAACCGTCCGAATCTGGGAGCAGAACCTCTCCTCTGGCCTCTGGGCCTGCACGGCGGTTCTGGATGAAACGCACACTCGAACTGTTCGATCTTGTGCTTGGTCACCGTCGGGTAAGCTATTGGCCACTGCAAGCTTCGATGCCACCACTGCCATTTGGGAAAATGTTGGTGGTGATTTTGAGTGTGTTTCTACTTTGGAGGGACACGAAAATGAAGTCAAGTGTGTGTCTTGGAACGCGGCTGGGACGTTGCTTGCAACTTGTAGTAGAGATAAGTCTGTTTGGATATGGGAAGTGCTGCCTGGGAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACACTCGCAGGATGTGAAAATGGTGAAGTGGCATCCCACAGAGGATATCTTGTTTTCATGTAGCTACGATAATAGTGTTAAGGTTTGGGCGGATGAAGGTGATAGTGATGATTGGCAGTGTGTTCAAACGCTTGGGGAACCCAATAACGGTCATACTTCCACTGTTTGGGCCCTCTCCTTCAATGTGAGTGGTGACAAAATGGTTACGTGTAGTGATGATCTTACACTGAAGGTATGGGAAACAGAAAGTGTAGGGACGCAATCTGGTGGTGGATTTGCACCTTGGACACATCTTTGCACTCTTTCAGGGTATCATGATCGGACAATATTCTCAGTTCATTGGTCAAGAGAAGGTATCTTTGCCAGTGGAGCCGCAGATAATGCTATACGGCTTTTTGTGGATGACAATGAAAGTCAGGTTGGTGGTCCTCTCTACAAGTTGCTGCTGAAGAAGGAGAAGGCCCATGACATGGATATAAATTCTGTGCAGTGGAGCCCTGGGGAGAAGCCGGTACTAGCCTCTGCAAGCGATGATGGGACAATCAAGGTGTGGGAGTTGACATCATACTAG
>Glyma03g35310.1 sequence type=predicted peptide gene model=Glyma03g35310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMELKEIQRLEGHTDKVWSLAWNPTTGHAGIPLVFASCSGDKTVRIWEQNLSSGLWACTAVLDETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKCVSWNAAGTLLATCSRDKSVWIWEVLPGNEFECVSVLQGHSQDVKMVKWHPTEDILFSCSYDNSVKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNVSGDKMVTCSDDLTLKVWETESVGTQSGGGFAPWTHLCTLSGYHDRTIFSVHWSREGIFASGAADNAIRLFVDDNESQVGGPLYKLLLKKEKAHDMDINSVQWSPGEKPVLASASDDGTIKVWELTSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
