Report for Sequence Feature Glyma03g35280
Feature Type: gene_model
Chromosome: Gm03
Start: 42550969
stop: 42555717
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g35280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G16710 AT
Annotation by Michelle Graham. TAIR10: Iron-sulphur cluster biosynthesis family protein | chr2:7248294-7250013 FORWARD LENGTH=137
SoyBase E_val: 3.00E-73 ISS
GO:0016226 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly
SoyBase N/A ISS
GO:0019243 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate
SoyBase N/A ISS
GO:0048193 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005198 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural molecule activity
SoyBase N/A ISS
GO:0051536 GO-mf
Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding
SoyBase N/A ISS
KOG1120
KOG
Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain)
JGI ISS
PTHR10072 Panther
HES-B RELATED
JGI ISS
PTHR10072:SF27 Panther
IRON-SULFUR CLUSTER ASSEMBLY 1
JGI ISS
PF01521 PFAM
Iron-sulphur cluster biosynthesis
JGI ISS
UniRef100_B9SRX1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Iron-sulfur cluster assembly protein, putative n=1 Tax=Ricinus communis RepID=B9SRX1_RICCO
SoyBase E_val: 2.00E-81 ISS
UniRef100_I1JQ14 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ14_SOYBN
SoyBase E_val: 2.00E-93 ISS
Expression Patterns of Glyma03g35280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g35280
Paralog Evidence Comments
Glyma19g37930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g35280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g195000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g35280
Coding sequences of Glyma03g35280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g35280.1 sequence type=CDS gene model=Glyma03g35280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCCAAGGCGATGAGCGTGGCAGCGGAGAAGATAGCGACGGCGGCGCGACGCCAAGCCGTGTCGCTAACGGACGCCGCCGCCTCGCGAATACGGCAGCTGCTACAGCAGCGTCAGAGGCCCTTCTTGAAGCTGGGAGTCAAGGCTCGCGGCTGCAACGGCTTATCCTACACCCTCAATTACGCAGATGAAAAAGGGAAGTTTGATGAGTTGGTTGAGGATAAGGGTGTTAAGATATTGATTGATCCAAAGGCCCTTATGCATGTCATTGGAACTAAAATGGATTTTGTAGATGACAAACTAAGATCGGAATTTATTTTCGTCAATCCAAATTCTAAAGGTCAGTGTGGTTGTGGTGAATCTTTCATGACAACAGGCAGTAGTGGATCTTCTAAGCCATGA
Predicted protein sequences of Glyma03g35280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g35280.1 sequence type=predicted peptide gene model=Glyma03g35280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASKAMSVAAEKIATAARRQAVSLTDAAASRIRQLLQQRQRPFLKLGVKARGCNGLSYTLNYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFVNPNSKGQCGCGESFMTTGSSGSSKP*