SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g35280

Feature Type:gene_model
Chromosome:Gm03
Start:42550969
stop:42555717
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g35280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16710AT Annotation by Michelle Graham. TAIR10: Iron-sulphur cluster biosynthesis family protein | chr2:7248294-7250013 FORWARD LENGTH=137 SoyBaseE_val: 3.00E-73ISS
GO:0016226GO-bp Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly SoyBaseN/AISS
GO:0019243GO-bp Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005198GO-mf Annotation by Michelle Graham. GO Molecular Function: structural molecule activity SoyBaseN/AISS
GO:0051536GO-mf Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding SoyBaseN/AISS
KOG1120 KOG Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) JGI ISS
PTHR10072Panther HES-B RELATED JGI ISS
PTHR10072:SF27Panther IRON-SULFUR CLUSTER ASSEMBLY 1 JGI ISS
PF01521PFAM Iron-sulphur cluster biosynthesis JGI ISS
UniRef100_B9SRX1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Iron-sulfur cluster assembly protein, putative n=1 Tax=Ricinus communis RepID=B9SRX1_RICCO SoyBaseE_val: 2.00E-81ISS
UniRef100_I1JQ14UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ14_SOYBN SoyBaseE_val: 2.00E-93ISS

Expression Patterns of Glyma03g35280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35280
ParalogEvidenceComments
Glyma19g37930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g195000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g35280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g35280
>Glyma03g35280.1   sequence type=CDS   gene model=Glyma03g35280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCAAGGCGATGAGCGTGGCAGCGGAGAAGATAGCGACGGCGGCGCGACGCCAAGCCGTGTCGCTAACGGACGCCGCCGCCTCGCGAATACGGCAGCTGCTACAGCAGCGTCAGAGGCCCTTCTTGAAGCTGGGAGTCAAGGCTCGCGGCTGCAACGGCTTATCCTACACCCTCAATTACGCAGATGAAAAAGGGAAGTTTGATGAGTTGGTTGAGGATAAGGGTGTTAAGATATTGATTGATCCAAAGGCCCTTATGCATGTCATTGGAACTAAAATGGATTTTGTAGATGACAAACTAAGATCGGAATTTATTTTCGTCAATCCAAATTCTAAAGGTCAGTGTGGTTGTGGTGAATCTTTCATGACAACAGGCAGTAGTGGATCTTCTAAGCCATGA
Predicted protein sequences of Glyma03g35280
>Glyma03g35280.1   sequence type=predicted peptide   gene model=Glyma03g35280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKAMSVAAEKIATAARRQAVSLTDAAASRIRQLLQQRQRPFLKLGVKARGCNGLSYTLNYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFVNPNSKGQCGCGESFMTTGSSGSSKP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo