SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26820 | AT | Annotation by Michelle Graham. TAIR10: ribonuclease 3 | chr1:9292760-9293722 REVERSE LENGTH=222 | SoyBase | E_val: 5.00E-30 | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0004521 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity | SoyBase | N/A | ISS |
| GO:0033897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonuclease T2 activity | SoyBase | N/A | ISS |
| KOG1642 | KOG | Ribonuclease, T2 family | JGI | ISS | |
| PTHR11240 | Panther | RIBONUCLEASE T2 | JGI | ISS | |
| PTHR11240:SF1 | Panther | S-RIBONUCLEASE | JGI | ISS | |
| PF00445 | PFAM | Ribonuclease T2 family | JGI | ISS | |
| UniRef100_G8A0H1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: S7-RNase n=1 Tax=Medicago truncatula RepID=G8A0H1_MEDTR | SoyBase | E_val: 1.00E-36 | ISS |
| UniRef100_I1JQ08 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ08_SOYBN | SoyBase | E_val: 4.00E-142 | ISS |
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Glyma03g35230 not represented in the dataset |
Glyma03g35230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g194500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g35230.2 sequence type=CDS gene model=Glyma03g35230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTTTAGTATAAATAGGAGTATTAAGTCCAAAAAAATATTAAAAATCTTTTTTTATCTATATATTTTTTTCTCCGTTTTATTATTCAGAATGTACCCTCTTATGATATGTGTTTTCTCTTTGGTGTTGGTTCTAAATGTACCTATCTCGTTTGCTTCTTATGACTTTTTTATGTTGTCTGAAACATGGCCAGCAACCTACTGTGGAATTAAAAATCGTTTGTTACCATGTGCCAAACAACCAAACACATTCACTATCCATGGACTATGGCCACAAAATCATATTGGTCCTCAGCCAGCATCATGCAGCAACCTCCAAAAGGATAAATTCGATAAAAGAATTATCACTTCTTCCTTGAAGTCAGCACTTGAGACAGGTTGGCCAAATTTAAACACACAAAACGATATGAGATTTTGGGTGACAGAGTGGGACAAACACGGGACTTGTTCATTGAACAAGTTCTCCCAATTTAATTATTTTCGTCTGGCGTTGAAAATCAAGGGAGAGTATAATCTAATGACTATCCTTTCTGGAGAACAAATTGTCCCGCATCATTCAACCGCATATGATAAAAACTCCATAATCCAAGCAATACATGGAGTTATTGACACATACCCTCAACTTACTTGTTATAAATATAACTTGAATAAACAATCATATTACAATCTTTCTGAAATAAGACTATGTTTAGACGACAATGGAAAGAACTACATAAATTGTCCTACTCCTACCACAAACTGTAATGGCAACATGTTATATTGGCCAATATAA
>Glyma03g35230.2 sequence type=predicted peptide gene model=Glyma03g35230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVFSINRSIKSKKILKIFFYLYIFFSVLLFRMYPLMICVFSLVLVLNVPISFASYDFFMLSETWPATYCGIKNRLLPCAKQPNTFTIHGLWPQNHIGPQPASCSNLQKDKFDKRIITSSLKSALETGWPNLNTQNDMRFWVTEWDKHGTCSLNKFSQFNYFRLALKIKGEYNLMTILSGEQIVPHHSTAYDKNSIIQAIHGVIDTYPQLTCYKYNLNKQSYYNLSEIRLCLDDNGKNYINCPTPTTNCNGNMLYWPI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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