Report for Sequence Feature Glyma03g35220
Feature Type: gene_model
Chromosome: Gm03
Start: 42517755
stop: 42518501
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g35220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G52760 AT
Annotation by Michelle Graham. TAIR10: Integral membrane Yip1 family protein | chr3:19553932-19554705 REVERSE LENGTH=257
SoyBase E_val: 5.00E-121 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG3103
KOG
Rab GTPase interacting factor, Golgi membrane protein
JGI ISS
PTHR21236 Panther
GOLGI MEMBRANE PROTEIN YIP1
JGI ISS
PTHR21236:SF2 Panther
GOLGI MEMBRANE PROTEIN SB140 (YIP1B)
JGI ISS
PF04893 PFAM
Yip1 domain
JGI ISS
UniRef100_G7L626 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein YIPF5 n=1 Tax=Medicago truncatula RepID=G7L626_MEDTR
SoyBase E_val: 6.00E-146 ISS
UniRef100_I1JQ07 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ07_SOYBN
SoyBase E_val: 3.00E-177 ISS
Expression Patterns of Glyma03g35220
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g35220
Paralog Evidence Comments
Glyma19g37880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g35220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g194400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g35220
Coding sequences of Glyma03g35220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g35220.1 sequence type=CDS gene model=Glyma03g35220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCAATAAAGAGTTCAAGGTCCCGCCGGTGGCTTTCCCCTCCGCCGGCAACCCCGCCGCGGCGGGTCCAAACCTCCAGCAGCGGCGCATGCCCACGCCGCCGTTCCAGCCGAACTCCGGTATCCCCTTCATGTCCTTCGACATAGGCTCCGCCGCGGCGTCCACCTCCTCGGGGCCGATCTACACCGGCCCCGCCGTGGGCCCCGGCGGCTCCGCCAACTTCGACGACGAGGAACCCCTCCTCGACGAGCTCGGGATCCACCCCGACCAAATCTGGAGCAAAATCAGATCCGTTCTGAACCCTTTCCGCGTCAACCACACTGTCCACAAAGATTCGGATCTCTCGGGCCCAATTCTTCTCTACATGTCCTTCTGCCTCTTCCAATTACTCGCCGGGAAGATCCAATTCGGCGTCATCTTGGGCTGGATCGTGGTCTCCTCCATCTTCTTATACGTCGTCTTCAACATGCTAGCCGGTCGAACCGGTAACCTCGATCTCCACACCTGCACCAGCGTCGTCGGTTACTGCCTCTTGCCGGTCGTCATTTTCTCTGCCCTCTCGCTCTTCTTACCGGTCGATGGGGTCATTCGCCTCTCGGTCGCCTCGGTTTTCGTCTTGTGGGCCACCAGGGCCTCCGCCGGACTCGTCGTTTCGCTCGCCGATGGCGGTGACGAACACCGTGGACTCATTGCGTACGCATCTTTCTTGATTTACACTCTGTTTTCGTTGCTTGTCATATTCTAG
Predicted protein sequences of Glyma03g35220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g35220.1 sequence type=predicted peptide gene model=Glyma03g35220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MANKEFKVPPVAFPSAGNPAAAGPNLQQRRMPTPPFQPNSGIPFMSFDIGSAAASTSSGPIYTGPAVGPGGSANFDDEEPLLDELGIHPDQIWSKIRSVLNPFRVNHTVHKDSDLSGPILLYMSFCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRTGNLDLHTCTSVVGYCLLPVVIFSALSLFLPVDGVIRLSVASVFVLWATRASAGLVVSLADGGDEHRGLIAYASFLIYTLFSLLVIF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
