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Report for Sequence Feature Glyma03g35210

Feature Type:gene_model
Chromosome:Gm03
Start:42511447
stop:42513516
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g35210
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52770AT Annotation by Michelle Graham. TAIR10: protein binding | chr3:19557891-19558094 REVERSE LENGTH=67 SoyBaseE_val: 1.00E-17ISS
GO:0006914GO-bp Annotation by Michelle Graham. GO Biological Process: autophagy SoyBaseN/AISS
GO:0009062GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process SoyBaseN/AISS
GO:0009943GO-bp Annotation by Michelle Graham. GO Biological Process: adaxial/abaxial axis specification SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010305GO-bp Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation SoyBaseN/AISS
GO:0010358GO-bp Annotation by Michelle Graham. GO Biological Process: leaf shaping SoyBaseN/AISS
GO:0043433GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_I1JQ06UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JQ06_SOYBN SoyBaseE_val: 3.00E-37ISS
UniRef100_Q9LXI8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein little zipper 3 n=1 Tax=Arabidopsis thaliana RepID=Q9LXI8_ARATH SoyBaseE_val: 5.00E-15ISS

Expression Patterns of Glyma03g35210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35210
ParalogEvidenceComments
Glyma19g37870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35210 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g194300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g35210
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g35210
>Glyma03g35210.2   sequence type=CDS   gene model=Glyma03g35210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGGCTGAACTCAGAGTTGTACTACCAGAACTGTCACATGATCAAAGAGAATGAAAGGCTGAGGAAGAAAGCTCAGCTTCTTAATCAAGAAAATCAACAACTTCTGTCTGAACTAAAAAAGAAGCTCTCCAAGGGAAATGCAAAAACCAATGCTGCTCCAAACACCATTCTTGACCTGAACCTTGGATCAAGTTCTAGTCATAATCCTTCTGGTTCCAGCAATTAA
Predicted protein sequences of Glyma03g35210
>Glyma03g35210.2   sequence type=predicted peptide   gene model=Glyma03g35210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERLNSELYYQNCHMIKENERLRKKAQLLNQENQQLLSELKKKLSKGNAKTNAAPNTILDLNLGSSSSHNPSGSSN*






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