Glyma03g35180 - SoyBase

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Report for Sequence Feature Glyma03g35180

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42486016
stop:	42487914
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36320	AT	Annotation by Michelle Graham. TAIR10: A20/AN1-like zinc finger family protein \| chr2:15229388-15229873 FORWARD LENGTH=161	SoyBase	E_val: 3.00E-62	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3173	KOG	Predicted Zn-finger protein	JGI		ISS
PTHR10634	Panther	PRK1-ASSOCIATED ZINC FINGER PROTEIN	JGI		ISS
PF01428	PFAM	AN1-like Zinc finger	JGI		ISS
PF01754	PFAM	A20-like zinc finger	JGI		ISS
UniRef100_B3IX31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor C2H2 n=1 Tax=Lotus japonicus RepID=B3IX31_LOTJA	SoyBase	E_val: 9.00E-71	ISS
UniRef100_I1JQ03	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ03_SOYBN	SoyBase	E_val: 7.00E-113	ISS

Expression Patterns of Glyma03g35180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35180

Paralog	Evidence	Comments
Glyma19g37840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g194000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g35180

Limit To All Plant Sequences

>Glyma03g35180.3   sequence type=transcript   gene model=Glyma03g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATGGGCCGCTGCCTTCTTCTCCACCACACCACTGCCGTCAAAGCCAGCCTGTCTCTTTTTCCATCTCACGTTAAAGCAAAAACAATTAATCAGTAATCTAATTAACAATAATGCATAATTTTCTCCTCCCAAGTCTCGACATAACTTTCCATCCCATTAATTAATTATCCTCTTAAGAATGAGAAGTTGAAAATGATCAATACCCATTTGTCTCCTTTCGCGGTGGCTTCCTCTTATTTTTTTCTTTCTCTCTCTCTTTCTCACTCTTATATCCTTTCCGAGTTCCGACTCTGTTAATCATTCTCCGTTAAGATTCTTTCTTCTTTCCTCTTTCCACTCTTGGTCTTATCTTCTTCACAATCCCACAACCACTCCTTGTTATAAATCAGATTTTTTTTTTCTCTTCTTACAGATCCAAACATGGCCGAAGAACACCGATGCCAAGCTCCCGAAGGTCACAGACTCTGCTCCAACAACTGCGGCTTCTTCGGTAGCCCCGCCACAATGAATCTCTGTTCCAAATGCTACAGAGACATCCGTTTGAAGGAAGAAGAACAAGCCAAAACTAAATCCACAATCGAAACCGCTCTTTCTGGATCTTCCTCCGCCACCGTCGCCGTTGCCTCCGCCGTGGATTCTCTTCCGGCGCCGGTTGAATCCCTCCCTCAACCGTCGGTGGTGAGTTCGCCAGATGTGGCCGCACCGGTTCAGGCGAACCGGTGCGGCGCGTGTAGGAAGCGCGTGGGATTGACTGGGTTTAAGTGCAGGTGCGGAACCACGTTTTGTGGGACTCACCGGTACCCCGAGAAACACGCGTGTGGCTTCGATTTCAAGGCGGTGGGGAGAGAGGAGATAGCACGGGCGAATCCCGTGATCAAAGGCGAGAAGCTACGGAGGATTTAATCTGCACCGTTGATATGATGATCGAAGCGATTAGGGTGAGTTGATCAGGACCGTCCGTCGTGGGCCGTTGATACGAACCTATTTCGAGCGTGTGTAAGAAAAAAAAAATCTATTAGTTATGACGACATTGGGAAGGGTTGAATAAGTCATATTTTGGAGGCTTTGCTTTGTGTTTGTTCATTAAAAATGGAAAATGTTAGGTCCACCCACGTTCGGAAATTGAGGGGTTTGTTTAGAATTGCAATGCAATGTAAAAAAGTGTAGTTTAATATTTTTCTACAGGCATTTCTATTTTTCTTCCGTTTGCGAGAAAGGTAAATTATCGTCTGCGTTGTATCCTGTCGTTCTCTCTTTTTCTCTTTCTTTTTGTTGCTCTCTGGATTTTTGTTTGAAAAACGAATATAGGTCAAAATAGACGCCTCGAATATAATTTTAAAATCCGATAGTGGAAAGTTGTGATCATATTATAACATTATAATAATAACAAAGGCTCGCTATAAATGTGTTGGGGGATAAACAAAACTATTCTGGAAGGCTGTGGCTGCTGTCCACTGAACCGAAAAGGTGAGAGAGTGGATGTACTCTAGGCCCAATTGTGGTCCTCCCAGTTGAGGTTGTGAATGGAAAAATGACATTTTAGATATGAAAGCTATACATATTAGTGTATGTTTGTTTTACTATGTC

Coding sequences of Glyma03g35180

Limit To All Plant Sequences

>Glyma03g35180.2   sequence type=CDS   gene model=Glyma03g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAAGAACACCGATGCCAAGCTCCCGAAGGTCACAGACTCTGCTCCAACAACTGCGGCTTCTTCGGTAGCCCCGCCACAATGAATCTCTGTTCCAAATGCTACAGAGACATCCGTTTGAAGGAAGAAGAACAAGCCAAAACTAAATCCACAATCGAAACCGCTCTTTCTGGATCTTCCTCCGCCACCGTCGCCGTTGCCTCCGCCGTGGATTCTCTTCCGGCGCCGGTTGAATCCCTCCCTCAACCGTCGGTGGTGAGTTCGCCAGATGTGGCCGCACCGGTTCAGGCGAACCGGTGCGGCGCGTGTAGGAAGCGCGTGGGATTGACTGGGTTTAAGTGCAGGTGCGGAACCACGTTTTGTGGGACTCACCGGTACCCCGAGAAACACGCGTGTGGCTTCGATTTCAAGGCGGTGGGGAGAGAGGAGATAGCACGGGCGAATCCCGTGATCAAAGGCGAGAAGCTACGGAGGATTTAA

>Glyma03g35180.3   sequence type=CDS   gene model=Glyma03g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAAGAACACCGATGCCAAGCTCCCGAAGGTCACAGACTCTGCTCCAACAACTGCGGCTTCTTCGGTAGCCCCGCCACAATGAATCTCTGTTCCAAATGCTACAGAGACATCCGTTTGAAGGAAGAAGAACAAGCCAAAACTAAATCCACAATCGAAACCGCTCTTTCTGGATCTTCCTCCGCCACCGTCGCCGTTGCCTCCGCCGTGGATTCTCTTCCGGCGCCGGTTGAATCCCTCCCTCAACCGTCGGTGGTGAGTTCGCCAGATGTGGCCGCACCGGTTCAGGCGAACCGGTGCGGCGCGTGTAGGAAGCGCGTGGGATTGACTGGGTTTAAGTGCAGGTGCGGAACCACGTTTTGTGGGACTCACCGGTACCCCGAGAAACACGCGTGTGGCTTCGATTTCAAGGCGGTGGGGAGAGAGGAGATAGCACGGGCGAATCCCGTGATCAAAGGCGAGAAGCTACGGAGGATTTAA

Predicted protein sequences of Glyma03g35180

Limit To All Plant Sequences

>Glyma03g35180.2   sequence type=predicted peptide   gene model=Glyma03g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEHRCQAPEGHRLCSNNCGFFGSPATMNLCSKCYRDIRLKEEEQAKTKSTIETALSGSSSATVAVASAVDSLPAPVESLPQPSVVSSPDVAAPVQANRCGACRKRVGLTGFKCRCGTTFCGTHRYPEKHACGFDFKAVGREEIARANPVIKGEKLRRI*

>Glyma03g35180.3   sequence type=predicted peptide   gene model=Glyma03g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEHRCQAPEGHRLCSNNCGFFGSPATMNLCSKCYRDIRLKEEEQAKTKSTIETALSGSSSATVAVASAVDSLPAPVESLPQPSVVSSPDVAAPVQANRCGACRKRVGLTGFKCRCGTTFCGTHRYPEKHACGFDFKAVGREEIARANPVIKGEKLRRI*

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