Glyma03g35166 - SoyBase

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Report for Sequence Feature Glyma03g35166

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42469761
stop:	42472423
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35166

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36310	AT	Annotation by Michelle Graham. TAIR10: uridine-ribohydrolase 1 \| chr2:15224692-15226633 REVERSE LENGTH=336	SoyBase	E_val: 2.00E-156	ISS
GO:0006152	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleoside catabolic process	SoyBase	N/A	ISS
GO:0006218	GO-bp	Annotation by Michelle Graham. GO Biological Process: uridine catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0045437	GO-mf	Annotation by Michelle Graham. GO Molecular Function: uridine nucleosidase activity	SoyBase	N/A	ISS
GO:0047622	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenosine nucleosidase activity	SoyBase	N/A	ISS
GO:0047724	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inosine nucleosidase activity	SoyBase	N/A	ISS
GO:0072585	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xanthosine nucleotidase activity	SoyBase	N/A	ISS
KOG2938	KOG	Predicted inosine-uridine preferring nucleoside hydrolase	JGI		ISS
PTHR12304	Panther	INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE	JGI		ISS
PF01156	PFAM	Inosine-uridine preferring nucleoside hydrolase	JGI		ISS
UniRef100_G7L609	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inosine-uridine preferring ribonucleoside hydrolase n=1 Tax=Medicago truncatula RepID=G7L609_MEDTR	SoyBase	E_val: 5.00E-166	ISS
UniRef100_UPI0002339609	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339609 related cluster n=1 Tax=unknown RepID=UPI0002339609	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g35166

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g35166 not represented in the dataset	Glyma03g35166 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35166

Paralog	Evidence	Comments
Glyma19g37830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35166 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g193800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35166

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g35166

Limit To All Plant Sequences

>Glyma03g35166.2   sequence type=transcript   gene model=Glyma03g35166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATGATAGCATGGCCATTCTTATGGCTTTTCAAAGTCCAGATGTGGAGGTTCTGGGTTTGACAACCATTTTTGGATAGTGTGAGATGGCAGGCCGTGAAGATATTCCAGTTGCACAGGGAAGCCATGAGCCATTGAAGGGTGGAAAGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAAAGTGCTAGTGAGTTTTTGGTAGAGAAAGTCTCTGAATATCCTGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATTTGGCTTTGGCAATCAAAAGGGATTCTTCCTTTGCAAGCAAAGTGAAGAGAATAGTTATACTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCCAATATCCATGGAGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGATGGTGTCCACGGAATTTTCCTCCACGATCCTGTAAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAAACACAAGGCATCTGTGTTGGGCATACACTTATGGACCAAGGATTGAAAAAGTTTGTCCAAATTTACAACTACTATTATTATGCACTTTTTTTTTGTTAATAATTTTGTGCTCAATATAATTGGCGGCGGCAGACGCGATGAAATACGAGCAACCCATGGACGGGTTATTCTCCTGTTGCAGTTGCTTGGACAGTGAATCTCGAGGAAGTTCTTGATTATATCAGGGAGCTGGTGATGAAACCCTGAAGTATAGGCATTTGTACTACCCTTCTGACAGACAAAAAGCATTGGAAAGTGATAGGACGATAGCTTCTTATTTGCAAAAATATGCATAAGGTCATTTTCTTTATTTCATTCAAGGTCACAATGAGTTCTTACCCCGTTTAATATTATAAAGTTCATGTACCAATGAAATTCTCTTTACATGAACTTATTTGTGTTTGGATTTCGCTACTCTTATTTGAGAAGAAAGCAGTCATTCTTTACTTTTCCTACCTCTGAACTTGCATGTTGCTTCTTAGTTCTTACTATGGTATTATAGAATTTCGGTTTGAAAATCGCACTAAAGACTTCTTCGCTTGTACCAAGAATATTCATAATTCCATTATTATCTCAGTTCTGAATTCTGAAATATATATGTTACGAGTTGTCTGGCTATGCCATCATTTTCATATTTGCTATGCAAGATTCTTAAGAATTTG

>Glyma03g35166.3   sequence type=transcript   gene model=Glyma03g35166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATGATAGCATGGCCATTCTTATGGCTTTTCAAAGTCCAGATGTGGAGGTTCTGGGTTTGACAACCATTTTTGGTAATACAACTACCGAACTTTCAACACTCAATGCTTTGCTTTTGGATAGTGTGAGATGGCAGGCCGTGAAGATATTCCAGTTGCACAGGGAAGCCATGAGCCATTGAAGGGTGGAAAGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAAAGTGCTAGTGAGTTTTTGGTAGAGAAAGTCTCTGAATATCCTGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATTTGGCTTTGGCAATCAAAAGGGATTCTTCCTTTGCAAGCAAAGTGAAGAGAATAGTTATACTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCCAATATCCATGGAGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGATGGTGTCCACGGAATTTTCCTCCACGATCCTGTAAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAAACACAAGGCATCTGTGTTGGGCATACACTTATGGACCAAGGATTGAAAAAGTTTGTCCAAATTTACAACTACTATTATTATGCACTTTTTTTTTGTTAATAATTTTGTGCTCAATATAATTGGCGGCGGCAGACGCGATGAAATACGAGCAACCCATGGACGGGTTATTCTCCTGTTGCAGTTGCTTGGACAGTGAATCTCGAGGAAGTTCTTGATTATATCAGGGAGCTGGTGATGAAACCCTGAAGTATAGGCATTTGTACTACCCTTCTGACAGACAAAAAGCATTGGAAAGTGATAGGACGATAGCTTCTTATTTGCAAAAATATGCATAAGGTCATTTTCTTTATTTCATTCAAGGTCACAATGAGTTCTTACCCCGTTTAATATTATAAAGTTCATGTACCAATGAAATTCTCTTTACATGAACTTATTTGTGTTTGGATTTCGCTACTCTTATTTGAGAAGAAAGCAGTCATTCTTTACTTTTCCTACCTCTGAACTTGCATGTTGCTTCTTAGTTCTTACTATGGTATTATAGAATTTCGGTTTGAAAATCGCACTAAAGACTTCTTCGCTTGTACCAAGAATATTCATAATTCCATTATTATCTCAGTTCTGAATTCTGAAATATATATGTTACGAGTTGTCTGGCTATGCCATCATTTTCATATTTGCTATGCAAGATTCTTAAGAATTTG

Coding sequences of Glyma03g35166

Limit To All Plant Sequences

>Glyma03g35166.1   sequence type=CDS   gene model=Glyma03g35166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATTCTTATGGCTTTTCAAAGTCCAGATGTGGAGGTTCTGGGTTTGACAACCATTTTTGGTAATACAACTACCGAACTTTCAACACTCAATGCTTTGCTTTTGTGTGAGATGGCAGGCCGTGAAGATATTCCAGTTGCACAGGGAAGCCATGAGCCATTGAAGGGTGGAAAGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAAAGTGCTAGTGAGTTTTTGGTAGAGAAAGTCTCTGAATATCCTGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATTTGGCTTTGGCAATCAAAAGGGATTCTTCCTTTGCAAGCAAAGTGAAGAGAATAGTTATACTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCCAATATCCATGGAGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGATGGTGTCCACGGAATTTTCCTCCACGATCCTGTAAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAAACACAAGGCATCTGTGTTGGGCATACACTTATGGACCAAGGATTGAAAAAGTTTGTCCAAATTTACAACTACTATTATTATGCACTTTTTTTTTGTTAA

>Glyma03g35166.2   sequence type=CDS   gene model=Glyma03g35166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGCCGTGAAGATATTCCAGTTGCACAGGGAAGCCATGAGCCATTGAAGGGTGGAAAGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAAAGTGCTAGTGAGTTTTTGGTAGAGAAAGTCTCTGAATATCCTGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATTTGGCTTTGGCAATCAAAAGGGATTCTTCCTTTGCAAGCAAAGTGAAGAGAATAGTTATACTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCCAATATCCATGGAGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGATGGTGTCCACGGAATTTTCCTCCACGATCCTGTAAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAAACACAAGGCATCTGTGTTGGGCATACACTTATGGACCAAGGATTGAAAAAGTTTGTCCAAATTTACAACTACTATTATTATGCACTTTTTTTTTGTTAA

>Glyma03g35166.3   sequence type=CDS   gene model=Glyma03g35166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGCCGTGAAGATATTCCAGTTGCACAGGGAAGCCATGAGCCATTGAAGGGTGGAAAGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAAAGTGCTAGTGAGTTTTTGGTAGAGAAAGTCTCTGAATATCCTGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATTTGGCTTTGGCAATCAAAAGGGATTCTTCCTTTGCAAGCAAAGTGAAGAGAATAGTTATACTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCCAATATCCATGGAGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGATGGTGTCCACGGAATTTTCCTCCACGATCCTGTAAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAAACACAAGGCATCTGTGTTGGGCATACACTTATGGACCAAGGATTGAAAAAGTTTGTCCAAATTTACAACTACTATTATTATGCACTTTTTTTTTGTTAA

Predicted protein sequences of Glyma03g35166

Limit To All Plant Sequences

>Glyma03g35166.1   sequence type=predicted peptide   gene model=Glyma03g35166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAILMAFQSPDVEVLGLTTIFGNTTTELSTLNALLLCEMAGREDIPVAQGSHEPLKGGKPRVADFVHGKDGLGNTFLPPPKGEKIEKSASEFLVEKVSEYPGEVSVLALGPLTNLALAIKRDSSFASKVKRIVILGGAFFALGNVNPAAEANIHGDPEAADIVFTSGADIVVIGINITTQVQFTDADLLELKESKGKYAPFLSDICKFYRDFHVKSDGVHGIFLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLMDQGLKKFVQIYNYYYYALFFC*

>Glyma03g35166.2   sequence type=predicted peptide   gene model=Glyma03g35166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGREDIPVAQGSHEPLKGGKPRVADFVHGKDGLGNTFLPPPKGEKIEKSASEFLVEKVSEYPGEVSVLALGPLTNLALAIKRDSSFASKVKRIVILGGAFFALGNVNPAAEANIHGDPEAADIVFTSGADIVVIGINITTQVQFTDADLLELKESKGKYAPFLSDICKFYRDFHVKSDGVHGIFLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLMDQGLKKFVQIYNYYYYALFFC*

>Glyma03g35166.3   sequence type=predicted peptide   gene model=Glyma03g35166   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGREDIPVAQGSHEPLKGGKPRVADFVHGKDGLGNTFLPPPKGEKIEKSASEFLVEKVSEYPGEVSVLALGPLTNLALAIKRDSSFASKVKRIVILGGAFFALGNVNPAAEANIHGDPEAADIVFTSGADIVVIGINITTQVQFTDADLLELKESKGKYAPFLSDICKFYRDFHVKSDGVHGIFLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLMDQGLKKFVQIYNYYYYALFFC*

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