Glyma03g35040 - SoyBase

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Report for Sequence Feature Glyma03g35040

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42366429
stop:	42376233
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G66950	AT	Annotation by Michelle Graham. TAIR10: pleiotropic drug resistance 11 \| chr1:24978239-24984461 FORWARD LENGTH=1454	SoyBase	E_val: 0	ISS
GO:0000302	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species	SoyBase	N/A	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0065	KOG	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily	JGI		ISS
PTHR19241	Panther	ATP-BINDING CASSETTE TRANSPORTER	JGI		ISS
PTHR19241:SF10	Panther	ATP-BINDING CASSETTE TRANSPORTER-RELATED	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
PF01061	PFAM	ABC-2 type transporter	JGI		ISS
PF08370	PFAM	Plant PDR ABC transporter associated	JGI		ISS
UniRef100_G7L5Z6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pleiotropic drug resistance ABC transporter family protein n=1 Tax=Medicago truncatula RepID=G7L5Z6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JPZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPZ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g35040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g35040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g192700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g35040

Limit To All Plant Sequences

>Glyma03g35040.1   sequence type=CDS   gene model=Glyma03g35040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCAATTCAACAAGTTATAGGGCAATGAGGACGACATCTTCATCTAAAGACATATTAATCCAAGAGGATAATGAACAAGATCTCAAATGGGATAAAATCCAACGTTTTCCTATGTTTGATCGCTTGAGAAAAGGGATGCTGAGGCTTGTGCTTGATAGGGGAAATGTTGTGCCTTACCAAGTTGTTGATGTTACCAATCAAGGGTTGCAGGACAAGAAGCTATTACTAGAGAGTGTACTAAAAGATGACAATGAGAAATTCCTACGTAAATTTAGAGAAAGAGTTGATAGGGTGGGGATTGAAATTCCAAAAATTGAAGTTCGATTTGAGAATTTATCTGTAGAGGGAGATGTGCATGTTGGAAGGAGAGCCCTTCCTACCCTACATAATGTTACTCTCAACGCTTTTGAGAGGATTCTGGGGATGTTTCAGTTCGCATCTTTCAGGAAGAGAAAAAATCATATTCTCAAAGATGTCAGTGGAATTGTCAAACCATCAAGGATGACCCTACTTCTGGGTCCTCCAGGTGCAGGGAAAACAACATTGCTTCTAGCACTTGCAGAAAAGCTTGATCGGGATTTGAGGGCTTTCGGGAGAGTGACTTATTGTGGCCATGACTTAAATGAATTTGTTGCTAAAAAAACTTGTGCCTATATTAGTCAACATGACCTTCATCATGGAGAAATGACGGTGAGAGAGACTTTGGACTTTTCAGCACATTGTCTAGGTGTTGGCACGAGGTATGAGATGTTGAAGGAAATCTCAAGAAGGGAGAGAGAAGCAGGAATTAAGCCAGACCCTGAGATTGTTGCATTCATGAAGGGTATTGCTATATCGGGCCAAAAAAACAATTTGATAACCGATTATATCATCAAGATACTTGGATTGGATATTTGTGCGGACATAAAGGTTGGTGATAACATGAGAAGGGGTATCTCTGGTGGACAAAAGAAGCGTGTCACAACAGGTGAGATGCTAGTTGGACCAGCAAAGGTATTTTTCATGGATGAAATATCAACAGGATTAGACAGTTCCACAACTTTCCAAATATGCAAGTTCTTGAGGCAGATGATTCATACAATGGAAGTAACAATGTTGGTTTCTCTTCTACAACCAGCACCAGAGACATATGAACTATTTGATGATATTATCCTACTTTCAGAAGGTCAAATTGTATACCAAGGTCCACGTGAACATGTGCTAGAGTTCTTCGAAAACATGGGATTCAAATGTCCTGAAAGAAAAGGAGTTGCTGACTTTTTACAAGAAGTAACGTCTAAGAAAGACCAACAACAATATTGGTCTCGTAGAAATGAACCTTATAGATATGTTTCAGTTCCTGAATTTGCAGGTTCTTTCCATTTGTTTTACGTAGGAAAGAAACTTGCATCAGAGATTAAGGTTCCTTACGATAAGAGCCAAACCAATGAAGCTGCCTTAGTGAAAAAAAAGTATGGTATATCAAATTGGGAACTACTAAAGGCATGTTTCTCAAGAGAATGGTTGTTTATGAAACGTGACATATTTGTTTACATATATAGGATAGTACATTTAACTGTCCTATCTATTTTAGGCTTCACTGTGTTCTTTAGAACCGAAATGCCAGTTGGTACTGTTGAAAATGGACAAAAGTTCTATGGAGCACTATTTTTTACTTTATTCAATATGATGTTTAATGGGTCTTCAGAACAAGCCATGATTGTTTCAAGGCTTCCTGTCTTTTACAAGCAAAGGGATTTTATGTTCTACCCTGCCTGGGCGTTTGCTTTACCTGTATGGATTCTCAGGATCCCCATTTCCTTTCTAGAATCAGGGATATGGATTGCCCTGACATACTACACAACTGGATTTGCTCCTTCAAGTAGCAGTTTTTTTTTTACTAAAATGAAAACAATTCAGAATTCACACTTGCGTGTCTTTCTATTTCGTCAGATTTTTCCGGCACTTCTGGGCATTATTTGGTACTCATCAGATGTCTCTATCTCTGTATCGGACTCATTGGTGCAACTGGTAGTACACACGTTGTTGCCAATATTTTATAATATTAAGCCATGGATGATATGGGGCTATTACATTTCTCCTATGATGTATGGCCAGAATGCCATAGTAATAAATGAATTTTTAGATGAAAGATGGAGTCAACCAAATACAGACCCTAGAATTGGTGCAACTACAGTTGGAAAGGTGCTTCTTAAGTCTAAAGGTTTTTTTACTGAAGAGTATTGGTTTTGGATATGCATTGGAGCCTTGTTTGGATTTGCTCTTCTTTTCAACCTTCTCTTCATTGTTGCATTGACTTATTTGAATCGTAATGATTCATCAAAAGCATTCATCATGGATGATGATGACAAGAAGAATAAAAAGTCAACAAATAAACACCGTATCATTGAAGACATAGCAGTGAAAAAATCTTCAGAACTTGTTGGTTGTCCTGATCAAGAACGAAGAACAAGAATGATCCTTCCATTTCAACCTCTTTCCCTTTCATTCAGTCACGTGAACTATTATGTAGATATGCCTTCTGAAATGAAAAATCAAGGAATCAATGAAGATAGACTTCAACTTCTGCGTGATGTCAGTGGTGCATTCAGGCCAGGCATATTGACAGCACTTATGGGTGTTAGTGGTGCTGGCAAGACAACCCTTTTGGATGTGTTAGTTGGGAGAAAAACAGGTGGATACATTGAAGGTAGTATTAGCATCTCAGGTCACCTAAAGAACCAAGCAACATATGCTCGAGTTAGTGGATACTGTGAACAAAATGATATTCATTCTCCCTATGTTACTGTATACGAGTCATTATTATTTTCAGCATGGCTTCGCCTTCCATCACATGTAAATACACAAACACGAAAGATGTTTGTTGAAGAGGTTATGGAATGGGTTGAGCTTAAACCAATCAAAGATGCACTTGTGGGTCTTCCAGGCATAGATGGTCTATCAACGGAACAAAGGAAAAGGCTTACTATTGCTGTAGAATTGGTTGCCAACCCTTCAATCATCTTGATGGATGAACCAACATCTGGCCTTGATGCTAGAGCTGCTGCTATTGTTATGCGAACTGTGAGAAAAACAGTAGATACGGGGAGAACTGTTGTGTGCACAATTCACCAACCAAGCATAGACATTTTCGAAGCTTTTGATGAGTTATTGCTGATGAAAAGAGGAGGACAAGTTATCTATGCTGGACCTCTTGGTCACCACTCACAGAAGCTCATAGAATATTTTGAAGCTATTGCAGGGATTCAAAAAATTAAAGATGGCTATAATCCTGCCACATGGATGCTTGACATCAGCACTCCTTCAATGGAGGCTCAACTTGACATAGATTTTGCAAAGATCTATGTTAACTCTACACTTTACCAAATGAATCAAGAGCTTATCAAAGAGCTTAGTACTCCCACACCAGGTTCCAAGGACTTATTCTTCCCAACCAAATATTCCCAATCATTCTTTGTGCAATGGAAAGCTTGTCTTTGGAAACAATATTGGTCATATTGGAGAAATCCTCCATATAATGGAATTCGATTCTTCTTCACATTAGCCTATGGTGTAATGTTTGGTCTAATTTTCTGGAAAAGAGCAGAAAATATCCAAAAACAGCAAGATTTATTTGATCTTTTGGGGGCCATGTTCTCTACTGTGATGTTCCTAGGAACCATGAACGCTGTGGGAGTGCAACCAGTTGTTGACATAGAAAGAACTGTACTCTATCGTGAAAGAGCAGCAGGGATGTATTCAGCATTGCCTTATGCGCTCGGTCAAGTGGTTATAGAGATAATGTACAGCTCAATTCAGACGGTCATGTACACTATCATCATTCATTCCATGATGGGATTTAAATGGAATGTTGGGAAATTCTTGTCGTTCTACTACTACATGCTGATGTGTTTTATTTACTTCACATTGTATGGGATGATGACTATTGCACTAACCCCGAGTTACCAAATTGCTTCCATTTGTATATCCTTTTTCTTGTGCATCTGGAACCTGTTCTCCGGCTTTTTCATTCCTAGGGTGGAAATCCCTGTATGGTGGAGATGGTTCTATTGGGCTACTCCTAATGCTTGGACGATATATGGACTTGTTACCTCTCAACTCGGCGATGAAATTGCACAAATAGATGTCCCAGGAGCAAAAAGTATGGGGCTGAAGGAACTCCTCAAGGAAAATATGGGTTTTGACTATGACTTCCTACCGGTGGTTGCTATTGTTCATGTAGGCTGGGTTATCATTTTCTTGTTTTTGTTTGTCTTTGGCGTGAAATTCCTGAACTTCCAAAAGAGATAG

Predicted protein sequences of Glyma03g35040

Limit To All Plant Sequences

>Glyma03g35040.1   sequence type=predicted peptide   gene model=Glyma03g35040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNSTSYRAMRTTSSSKDILIQEDNEQDLKWDKIQRFPMFDRLRKGMLRLVLDRGNVVPYQVVDVTNQGLQDKKLLLESVLKDDNEKFLRKFRERVDRVGIEIPKIEVRFENLSVEGDVHVGRRALPTLHNVTLNAFERILGMFQFASFRKRKNHILKDVSGIVKPSRMTLLLGPPGAGKTTLLLALAEKLDRDLRAFGRVTYCGHDLNEFVAKKTCAYISQHDLHHGEMTVRETLDFSAHCLGVGTRYEMLKEISRREREAGIKPDPEIVAFMKGIAISGQKNNLITDYIIKILGLDICADIKVGDNMRRGISGGQKKRVTTGEMLVGPAKVFFMDEISTGLDSSTTFQICKFLRQMIHTMEVTMLVSLLQPAPETYELFDDIILLSEGQIVYQGPREHVLEFFENMGFKCPERKGVADFLQEVTSKKDQQQYWSRRNEPYRYVSVPEFAGSFHLFYVGKKLASEIKVPYDKSQTNEAALVKKKYGISNWELLKACFSREWLFMKRDIFVYIYRIVHLTVLSILGFTVFFRTEMPVGTVENGQKFYGALFFTLFNMMFNGSSEQAMIVSRLPVFYKQRDFMFYPAWAFALPVWILRIPISFLESGIWIALTYYTTGFAPSSSSFFFTKMKTIQNSHLRVFLFRQIFPALLGIIWYSSDVSISVSDSLVQLVVHTLLPIFYNIKPWMIWGYYISPMMYGQNAIVINEFLDERWSQPNTDPRIGATTVGKVLLKSKGFFTEEYWFWICIGALFGFALLFNLLFIVALTYLNRNDSSKAFIMDDDDKKNKKSTNKHRIIEDIAVKKSSELVGCPDQERRTRMILPFQPLSLSFSHVNYYVDMPSEMKNQGINEDRLQLLRDVSGAFRPGILTALMGVSGAGKTTLLDVLVGRKTGGYIEGSISISGHLKNQATYARVSGYCEQNDIHSPYVTVYESLLFSAWLRLPSHVNTQTRKMFVEEVMEWVELKPIKDALVGLPGIDGLSTEQRKRLTIAVELVANPSIILMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGHHSQKLIEYFEAIAGIQKIKDGYNPATWMLDISTPSMEAQLDIDFAKIYVNSTLYQMNQELIKELSTPTPGSKDLFFPTKYSQSFFVQWKACLWKQYWSYWRNPPYNGIRFFFTLAYGVMFGLIFWKRAENIQKQQDLFDLLGAMFSTVMFLGTMNAVGVQPVVDIERTVLYRERAAGMYSALPYALGQVVIEIMYSSIQTVMYTIIIHSMMGFKWNVGKFLSFYYYMLMCFIYFTLYGMMTIALTPSYQIASICISFFLCIWNLFSGFFIPRVEIPVWWRWFYWATPNAWTIYGLVTSQLGDEIAQIDVPGAKSMGLKELLKENMGFDYDFLPVVAIVHVGWVIIFLFLFVFGVKFLNFQKR*

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