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Report for Sequence Feature Glyma03g35030

Feature Type:gene_model
Chromosome:Gm03
Start:42354556
stop:42363837
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36380AT Annotation by Michelle Graham. TAIR10: pleiotropic drug resistance 6 | chr2:15257583-15263627 FORWARD LENGTH=1453 SoyBaseE_val: 0ISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
GO:0042626GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances SoyBaseN/AISS
KOG0065 KOG Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily JGI ISS
PTHR19241Panther ATP-BINDING CASSETTE TRANSPORTER JGI ISS
PTHR19241:SF10Panther ATP-BINDING CASSETTE TRANSPORTER-RELATED JGI ISS
PF00005PFAM ABC transporter JGI ISS
PF01061PFAM ABC-2 type transporter JGI ISS
PF08370PFAM Plant PDR ABC transporter associated JGI ISS
UniRef100_G7L5Z3UniRef Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter G family member n=1 Tax=Medicago truncatula RepID=G7L5Z3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233718EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233718E related cluster n=1 Tax=unknown RepID=UPI000233718E SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma19g37760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma03g35030.2   sequence type=CDS   gene model=Glyma03g35030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCACATCAGTGAGAAATGATTTGGTCAGCGGAAAAAGAAACCAGCGGAGCTGGCCCTCATCGAGTTTCAGAGCAGCAAGTTGGAGTGCATCTCCATTCACAAAGAGTGCTGGACGCAGCAGTGGAGAGGATAATGAGGAGGATCTCAAATGGGCTGCCATCGAGCGTTTGCCAACGCTAGATCGCATGAGAAAAGGGATGATGAGTGTAGTGCTTGACAACGGAAAGGTTGTGTGTTGCCAAGTTGATGTCACTCATCTTAAGTTGCAAGACAAGAAGCAACTATTGGATACTGTACTCAAATATGTTGACGATGATAATGATAAGTTTCTTCGTAAACTTAGAGACAGAACTAATAGGGTGGGGATTAAAATTCCAAATATTGAAGTCAGATACGAGAATTTATCGGTGGAGGGAAATGTGCATGTTGGAACTAGAGCACTTCCTACCCTGCTTAATGTTACTCTCAACACCTTTGAGAGGATTCTGGAGTTGTTTCGCCTTGCACCTTCCAAGAAGAGGAAAATTCATATTCTTAAAGATGTTAGTGGAATCGTCAAACCATCAAGGATGACCCTACTTCTAGGTCCTCCAGGTGCAGGGAAAACAACATTACTTTTAGCACTTGCAGGGAAGCTTGACCCAGATTTAAAGGTTTCAGGGAGAATAACTTATTGTGGCCATGAACTGAAAGAATTTGTTGCTAAAAAAACTTGTGCCTATATTGGTCAACATGACCTTCACTATGGAGAAATGACAGTGAGAGAGACATTAGATTTTTCAGGACGTTGTCTAGGTGTTGGCACAAGGTATCAAATGTTGGAAGAACTTTTACGAAGGGAGAAACAAGCAGGAATTAAACCGGATCCTGAGATTGATGCATTTATGAAGGCTACAGCCATATATGGTCAAAAAACTAATTTGCAAACAGATTATGTTCTTAAGATAATTGGATTGGATATTTGCGCTGACACTTTGGTTGGTGATAACATGAGAAGGGGTATCTCCGGTGGACAAAGGAAGCGTGTCACAACAGGGGAGATGCTAGTAGGTCCGGCAAAGGCACTATTTATGGACGAAATATCAACAGGATTGGACAGTTCCACCACTTTTCAGATATGCAAGTTCATGAGGCAAATGGTTCATATAATGGATGAAACCATGGTGATTTCTCTTCTACAACCAGCACCGGAGACATATGAACTATTTGATGATGTTATCCTTCTTTCAGAAGGTCAAATTGTATACCAAGGTCAACGAGAACATGTGCTAGAGTTCTTTGAAAACATGGGTTTCAAATGTCCTCCAAGAAAGGGAGTTGCTGACTTTTTACAAGAAGTAACATCTAAGAAAGATCAAGAACAATATTGGTTTAGAAGAGATGAACCTTATAGATACATTTCAGTTCCTGAATTTGCAGAGTGCTTCCAATCGTTTTACATAGGAGAACAACTTGCAACAGAGTTTAAGGTTCCTTATGATAAGAGTCAAACTCATCGTGCTGCCTTAGCTAAAGACAAGTACGGTATATCAAATTGGGAACTACTGAAGGCATGTTTCTCAAGAGAATGGTTGCTTATGAGACGCGAAATGTTTGTCTACATATACAGGATAATACAGTTAGTTGTCTTATCTATTTTAGGCTTTACTTTGTTCCTTAGAACTGAAATGTCAGTGGGCACTGTTGAAGATGGGATGAAGTTCTTTGGAGCAATGTTTTTCTCTATAATGAACATAATGTTCAATGGGTTTTCAGAACAAGCCATGCTTGTTTCAAGGCTTCCTGTCTTTTACAAACAAAGGGATTTCATGTTCTACCCTGCATGGGCATTTGGGTTACCTATATGGGTTCTCAGGATCCCCATTTCCTTGGTGGAATCAGGAATATGGGTTGTTTTCACATACTACACAATTGGATTTGCTCCTTCAGCTAGCAGGTTTTTCAAACAATTCTTGGCACTGTTTGGCGTTCATCAGATGGCTATCTCTCTATTTCGGCTCGTTGGTGCAGTTGGTAGAACATATGTTGTTGCTAATATCCTGAGTGGCTTGACTTTTCAAATAGTATTGGTGCTTGGAGGATTTATTGTCTCCAAAAATAATATCAAGCCATGGTTGAAATGGGGCTATTATGTTTCTCCTATGATGTATGGTCAGAATGCCATAGTAATAAATGAATTTTTAGACGAAAGATGGAGTAAACCAAATACAGACTCTAGATTTGATGCACCTACAGTTGGAAAAGTACTTCTGAAGTCTAGAGGCTTTTTCACTGATGATTATTGGTTTTGGATATGTATTGGAGCCTTGTTTGGTTTTGTTCTTCTTTTCAATCTTCTGTGCATTGTTGCATTGACTTATTTGAATGGAGGTCAAGGTATAAACATGGCAGTGAGAAATGCTTCACATCAAGAACGAAGAACAGGAATGGTCCTGCCGTTTCAACCTCTTTCACTCGCATTCAATGACGTGAACTACTATGTAGACATGCCTGCTGAAATGAAAAGTCAAGGAATCAATGAAGATAGACTTCAACTACTACATGATGCTAGTGGTGCTTTTAGACCAGGTATTTTGACAGCACTTATGGGTGTTAGTGGTGCTGGGAAGACTACCCTTATGGATGTATTAGCTGGAAGAAAAACAGGTGGATACATTGAAGGAAGTATTAGCATCTCAGGTTATCCAAAGAACCAAGCAACATTTGCTCGTGTCAGCGGTTATTGTGAACAAAATGACATTCATTCTCCATATGTTACTGTGTATGAGTCACTATTGTTTTCAGCATGGCTTCGCCTTCCTTCAGATGTAAAAGCACAAAATCGAAAGATGTTTGTTGAAGAAGTTATGGAGTTGGTTGAGCTTAACCAAATCAGAAATGCACTTGTGGGCCTTCCAGGAGTGGATGGTCTATCCACGGAACAGAGGAAAAGGGTTACTATTGCTGTAGAATTGGTTGCCAACCCTTCAATTATCTTCATGGATGAACCAACATCTGGCCTTGATGCTAGAGCTGCTGCTATTGTTATGCGTACTGTAAGAAACACAGTGGACACTGGGAGAACCGTTGTTTGCACAATTCATCAACCAAGCATAGACATTTTTGAAGCTTTTGATGAGTTACTTTTGATGAAAAGAGGAGGACAAGTTATCTATGCTGGACCTCTTGGTCACCATTCACAAAAGCTCATAGAATATTTTGAATCCATTGCAGGGGTTCAAAAAATCAAGGATGGTTATAATCCTGCCACATGGATGCTCGAGGTTAGCACTCCTTCAATTGAGGCTCATCTTGGCATAGATTTTGCGGAGATTTACACTAACTCTACTCTTTACCAAAGGAATCAAGAGCTTATCAAAGAGCTCAGTACTCCACCACAGGGTTCCAGTGACTTGCGCTTCCCAACCAAATATTCCCAATCATTCTTTGTTCAGTGCAAAGCTTGCTTCTGGAAACAATATTGGTCGTATTGGAGAAACCCTTCGTACAATGCAGTTCGATTGTTCTTCACAATAGCCATTGGGATAATGTTTGGTCTAATCTTCTGGAATAAAGCCAAAAATATCAAAAAGCAACAAGATTTGTTTGATCTTTTAGGAGCCATGTACGCTGCAGTGATGTTCCTTGGAACCTCGAACACTATGGGAGTGCAACCAATTGTTGACATAGAAAGAACTGTATTGTATCGTGAAAGAGCTGCAGGGATGTATTCAACATTGACTTATGCAATTAGTCAGGTGGCAATAGAGGCAATTTATTCTGCCACTCAAACGACCATCTTCAGTGTCATCATCTACTCCATGATGGGGTTTGAATGGACGGCCAGGAAATTTCTTTCCTTCTACTACTTCATGCTTATGTGTTTGATCTACTACACATTATATGGGATGATGATTGTTGCCGTCACCCCAAGTTTTCAAATTGCTGCTGTTTGCAATTCCTTCTTCTTGACCATCTGGAACACGTTCTGTGGCTTTGTCATTCCTAGGACGCAAATTCCTATATGGTGGAGATGGTACTATTGGCTAGCTCCTAATGCTTGGACACTGTATGGCCTTGTTACCTCTCAATTCGGTGATAAAATTACACAAGTGGAAATTCCAGGAGCTGAAAACATGGGGCTGAAGGAACTACTTAAGAAAAACTTCGGTTATGACTATCACTTCCTCCCAGTGGTTGTTGTTGTTCACTTAGGCTGGGTTCTCCTTTTCTTGTTTGTTTTTGCCTATAGCATAAAATTCCTGAACTTCCAAAAGAGATGA

>Glyma03g35030.2   sequence type=predicted peptide   gene model=Glyma03g35030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTSVRNDLVSGKRNQRSWPSSSFRAASWSASPFTKSAGRSSGEDNEEDLKWAAIERLPTLDRMRKGMMSVVLDNGKVVCCQVDVTHLKLQDKKQLLDTVLKYVDDDNDKFLRKLRDRTNRVGIKIPNIEVRYENLSVEGNVHVGTRALPTLLNVTLNTFERILELFRLAPSKKRKIHILKDVSGIVKPSRMTLLLGPPGAGKTTLLLALAGKLDPDLKVSGRITYCGHELKEFVAKKTCAYIGQHDLHYGEMTVRETLDFSGRCLGVGTRYQMLEELLRREKQAGIKPDPEIDAFMKATAIYGQKTNLQTDYVLKIIGLDICADTLVGDNMRRGISGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQICKFMRQMVHIMDETMVISLLQPAPETYELFDDVILLSEGQIVYQGQREHVLEFFENMGFKCPPRKGVADFLQEVTSKKDQEQYWFRRDEPYRYISVPEFAECFQSFYIGEQLATEFKVPYDKSQTHRAALAKDKYGISNWELLKACFSREWLLMRREMFVYIYRIIQLVVLSILGFTLFLRTEMSVGTVEDGMKFFGAMFFSIMNIMFNGFSEQAMLVSRLPVFYKQRDFMFYPAWAFGLPIWVLRIPISLVESGIWVVFTYYTIGFAPSASRFFKQFLALFGVHQMAISLFRLVGAVGRTYVVANILSGLTFQIVLVLGGFIVSKNNIKPWLKWGYYVSPMMYGQNAIVINEFLDERWSKPNTDSRFDAPTVGKVLLKSRGFFTDDYWFWICIGALFGFVLLFNLLCIVALTYLNGGQGINMAVRNASHQERRTGMVLPFQPLSLAFNDVNYYVDMPAEMKSQGINEDRLQLLHDASGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARVSGYCEQNDIHSPYVTVYESLLFSAWLRLPSDVKAQNRKMFVEEVMELVELNQIRNALVGLPGVDGLSTEQRKRVTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGHHSQKLIEYFESIAGVQKIKDGYNPATWMLEVSTPSIEAHLGIDFAEIYTNSTLYQRNQELIKELSTPPQGSSDLRFPTKYSQSFFVQCKACFWKQYWSYWRNPSYNAVRLFFTIAIGIMFGLIFWNKAKNIKKQQDLFDLLGAMYAAVMFLGTSNTMGVQPIVDIERTVLYRERAAGMYSTLTYAISQVAIEAIYSATQTTIFSVIIYSMMGFEWTARKFLSFYYFMLMCLIYYTLYGMMIVAVTPSFQIAAVCNSFFLTIWNTFCGFVIPRTQIPIWWRWYYWLAPNAWTLYGLVTSQFGDKITQVEIPGAENMGLKELLKKNFGYDYHFLPVVVVVHLGWVLLFLFVFAYSIKFLNFQKR*







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