Glyma03g35010 - SoyBase

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Report for Sequence Feature Glyma03g35010

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42329293
stop:	42333139
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52910	AT	Annotation by Michelle Graham. TAIR10: growth-regulating factor 4 \| chr3:19616177-19618268 REVERSE LENGTH=380	SoyBase	E_val: 1.00E-87	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016818	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	SoyBase	N/A	ISS
PF08879	PFAM	WRC	JGI		ISS
PF08880	PFAM	QLQ	JGI		ISS
UniRef100_G7L5Z0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GRL3 n=1 Tax=Medicago truncatula RepID=G7L5Z0_MEDTR	SoyBase	E_val: 4.00E-152	ISS
UniRef100_UPI000189D963	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D963 related cluster n=1 Tax=unknown RepID=UPI000189D963	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g35010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35010

Paralog	Evidence	Comments
Glyma19g37740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g192200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g35010

Limit To All Plant Sequences

>Glyma03g35010.3   sequence type=transcript   gene model=Glyma03g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCTCTCAGCTGCAATGGAAACTGTACTCTCGGATCAAAACCCTCCCTATCCCTATGTCACTCTTCACTTCATTTATGTACCTCTGCCTCTACCCTTTTCATTGCATTGTTTCACACACCACATTCGTCCAAAACCAACTCATTAAAAAATTAATTAAAACACACACACAAAAAAAGCAGATGAATATAATATTATTCTATGCCACTCTACTTTATAGTAGACTCCTAGTAGTTATGATAATATAATATTCTGAAAACTAAAAAGCTTTGGTTTTTCCACTTACAAGCCCTATGCTATGCTACGCTGCTGCTGCTACTTCTTCCCTCGAGTGGTATTTCCAAAGCAAAGCAGAAAGACAAAGACCGCAGGCTTTGCTGTCAGAAAGAAGCAAACAACTCTCTCTCTCTCACTCCACCACCCTTTATTTCTCTCTCACACACAGGTAGGTATCTGCCAAAGATATAAAGGAGCCCGAAGAGGACACTGTAAAAGCTTTTTACAAACTTGGTCTTTACACATCCAACACAACCAACGAAGTTAATTAGCCACCACAGTCACGCACGCTAAGCCAAACCTAATAGTAATAGTAGCAAGTTTCTTTCTTTTTTGCTCTCTCTCTCTCCATGGACTTCCATCTGAAGCAATGGAGAAACCAGCACGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAACAACAGCCATCAGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCTTCTGCTACAATGACTTCTACCACCACTAACAGATTATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCTCCACACTATTACCTCCATCACCCTCTCCAACATTACCAACCTTCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAGTGGCGCTGTTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCACCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTATTAACAATTGTGGTGTAACTGGAGTTGGATCCCTAGGACCAGGTGCTTCATCATCTTCCATTTGTTCACCACCCTTAGCTTCTGCTTCATTCAAATCTCCTTTTGATCTTCATCTTGATGAACGTTCCTCTGGGACCAAGAATGAAGACGAAGATCATGTGGGTGGGGATGGCAGATCAGGTGGAGGTGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTCCAAGACTCTGACAACGTTGAAAACAATGCTGCTGCTGGCCGTAGCCTCTCTATTTCAATGCCCGGTGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACTCGGGCCCAGGAAATGAGAATGTAAGCCTCGAGCCAGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCGATGGGAGGTCCACTTGCTGAGGCACTCAGATCATCTACTTCAACCTCATCTCCCACTAGTGTTTTGCATCGTCACTTGCCTCGTGGATCTGAGACCAGCTTTATTAGCACCTGAATTTAGTTATAGTGGGTGCCCCGATTATTTTTCTGTTTCTTGTTTCGAGGTTTAAGTTCCACTTTTGGAGCATTCTTGGACCACGGTTATGTTCTTTTCAAACTGTGTAGACTACTTTTGTTTCTAAGTGGGCGATGAAAGGATATGGTCGGTCCCTGGTTGGATTAATTCGAAGTAATACTAAATTGTCAATTAACAATCACATTTTCTTTATGAAAGTACTTTAGTTCCTCAGAATTCAGTGAAATAACTAGTTAGTCAAATATGTACTCAAAACACCTGTCTCTAAGTGCTGATTTCCCT

Coding sequences of Glyma03g35010

Limit To All Plant Sequences

>Glyma03g35010.2   sequence type=CDS   gene model=Glyma03g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCACGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAACAACAGCCATCAGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCTTCTGCTACAATGACTTCTACCACCACTAACAGATTATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCTCCACACTATTACCTCCATCACCCTCTCCAACATTACCAACCTTCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAGTGGCGCTGTTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCACCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTATTAACAATTGTGGTGTAACTGGAGTTGGATCCCTAGGACCAGGTGCTTCATCATCTTCCATTTGTTCACCACCCTTAGCTTCTGCTTCATTCAAATCTCCTTTTGATCTTCATCTTGATGAACGTTCCTCTGGGACCAAGAATGAAGACGAAGATCATGTGGGTGGGGATGGCAGATCAGGTGGAGGTGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTCCAAGACTCTGACAACGTTGAAAACAATGCTGCTGCTGGCCGTAGCCTCTCTATTTCAATGCCCGGTGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACTCGGGCCCAGGAAATGAGAATGTAAGCCTCGAGCCAGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCGATGGGAGGTCCACTTGCTGAGGCACTCAGATCATCTACTTCAACCTCATCTCCCACTAGTGTTTTGCATCGTCACTTGCCTCGTGGATCTGAGACCAGCTTTATTAGCACCTGA

>Glyma03g35010.3   sequence type=CDS   gene model=Glyma03g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCACGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAACAACAGCCATCAGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCTTCTGCTACAATGACTTCTACCACCACTAACAGATTATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCTCCACACTATTACCTCCATCACCCTCTCCAACATTACCAACCTTCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAGTGGCGCTGTTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCACCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTATTAACAATTGTGGTGTAACTGGAGTTGGATCCCTAGGACCAGGTGCTTCATCATCTTCCATTTGTTCACCACCCTTAGCTTCTGCTTCATTCAAATCTCCTTTTGATCTTCATCTTGATGAACGTTCCTCTGGGACCAAGAATGAAGACGAAGATCATGTGGGTGGGGATGGCAGATCAGGTGGAGGTGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTCCAAGACTCTGACAACGTTGAAAACAATGCTGCTGCTGGCCGTAGCCTCTCTATTTCAATGCCCGGTGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACTCGGGCCCAGGAAATGAGAATGTAAGCCTCGAGCCAGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCGATGGGAGGTCCACTTGCTGAGGCACTCAGATCATCTACTTCAACCTCATCTCCCACTAGTGTTTTGCATCGTCACTTGCCTCGTGGATCTGAGACCAGCTTTATTAGCACCTGA

Predicted protein sequences of Glyma03g35010

Limit To All Plant Sequences

>Glyma03g35010.2   sequence type=predicted peptide   gene model=Glyma03g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFHLKQWRNQHESEEQHSTKMPKLLPESHQQQQPSASALPLFVPEPNSSKVSTLSDSTLASATMTSTTTNRLFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYYLHHPLQHYQPSALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSAINNCGVTGVGSLGPGASSSSICSPPLASASFKSPFDLHLDERSSGTKNEDEDHVGGDGRSGGGGGHMLRHFFDDWPRSLQDSDNVENNAAAGRSLSISMPGASSDVSLKLSTGYGEDSGPGNENVSLEPEQLQLNWAGGWASSNQVASMGGPLAEALRSSTSTSSPTSVLHRHLPRGSETSFIST*

>Glyma03g35010.3   sequence type=predicted peptide   gene model=Glyma03g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFHLKQWRNQHESEEQHSTKMPKLLPESHQQQQPSASALPLFVPEPNSSKVSTLSDSTLASATMTSTTTNRLFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYYLHHPLQHYQPSALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSAINNCGVTGVGSLGPGASSSSICSPPLASASFKSPFDLHLDERSSGTKNEDEDHVGGDGRSGGGGGHMLRHFFDDWPRSLQDSDNVENNAAAGRSLSISMPGASSDVSLKLSTGYGEDSGPGNENVSLEPEQLQLNWAGGWASSNQVASMGGPLAEALRSSTSTSSPTSVLHRHLPRGSETSFIST*

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