SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36410 | AT | Annotation by Michelle Graham. TAIR10: Family of unknown function (DUF662) | chr2:15279041-15280270 FORWARD LENGTH=192 | SoyBase | E_val: 2.00E-80 | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| PTHR21470 | Panther | NTKL-BINDING PROTEIN 1 | JGI | ISS | |
| PF04949 | PFAM | Family of unknown function (DUF662) | JGI | ISS | |
| UniRef100_I1JPY3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPY3_SOYBN | SoyBase | E_val: 5.00E-113 | ISS |
| UniRef100_Q9SJR4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9SJR4_ARATH | SoyBase | E_val: 1.00E-75 | ISS |
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Glyma03g35000 not represented in the dataset |
Glyma03g35000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g37700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g192100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g35000.2 sequence type=transcript gene model=Glyma03g35000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTGATATTGTATTAATTTTAGGAATAGAAAGTAAATGTTTGGTCCATAAAGGCAAAGGGGGCAACCCAGATAACATAAGAAGCGCACTCGCAACAGGGGAGGAAGCAGAGCACTGCAGCCTCATCATTTCAAGGCCAACACAAAGCAGAGAAAGCAAAAAAGAAAAAAAAGCAAAGAGAGAGAGAGAGATAATAAAGAGAAAAAACTGAAGGAAGAAGAAAGGGTTTGTTTGTGTGAAAGAAAGAGAAAGAGAGGATGCAGAGTGAGAACCAGAACAACCAGTTGGTGGTGCAGAATTCGGGGAGCCTGAGCTTCAGCAGCCATTTGTCGAAGGAAGACGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAGAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTAGGTCGAGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTCAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGGGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCGATGCAATGATTTAGCCAAACTGCTAATGACTCCTGATTAGCCTTGTGTGGTATATTAAAGATGATGACATAGTATATTTTTATATGTATGGGTGTTTTGTTTTGTGCTTGTGTAATTTTGTGGTGTTGATGTTTGTTTAACTAGCATTTGATGGGACAATCAGCTAATTTAGGAGGGCTATATACCCTACAAACAGCCAGGCTTGTAACTAAATACTTGCATTTTGTTGTCATTTTTTCTCCCCTTCAATTCACTTTTCTTTGGCTTTGTTCACCTTAATTTAATTTATTGATGTAATTTGAATTTTGTTGCCACGAAGGATGGTTCCAACAAAGTCCTGGTGTGTTTTGCTTTTAGTTCAATGATTTACCATTATAATTGAATATAAAATTATATTATAT >Glyma03g35000.3 sequence type=transcript gene model=Glyma03g35000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTGATATTGTATTAATTTTAGGAATAGAAAGTAAATGTTTGGTCCATAAAGGCAAAGGGGGCAACCCAGATAACATAAGAAGCGCACTCGCAACAGGGGAGGAAGCAGAGCACTGCAGCCTCATCATTTCAAGGCCAACACAAAGCAGAGAAAGCAAAAAAGAAAAAAAAGCAAAGAGAGAGAGAGAGATAATAAAGAGAAAAAACTGAAGGAAGAAGAAAGGGTTTGTTTGTGTGAAAGAAAGAGAAAGAGAGGATGCAGAGTGAGAACCAGAACAACCAGTTGGTGGTGCAGAATTCGGGGAGCCTGAGCTTCAGCAGCCATTTGTCGAAGGAAGACGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAGAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTAGGTCGAGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACCTGCCAGAAGAAGGTGAAGTTTATTGAATTTCTCAGAAAACCATTAATACTCGGTTGAATAACATGTTATAAAGTGCCGAATTATACGGACCGTGACATGTTATTGGGTACACCATTGAGATTGGGTTTTTGATTATGCATTTCAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTCAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGGGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCGATGCAATGATTTAGCCAAACTGCTAATGACTCCTGATTAGCCTTGTGTGGTATATTAAAGATGATGACATAGTATATTTTTATATGTATGGGTGTTTTGTTTTGTGCTTGTGTAATTTTGTGGTGTTGATGTTTGTTTAACTAGCATTTGATGGGACAATCAGCTAATTTAGGAGGGCTATATACCCTACAAACAGCCAGGCTTGTAACTAAATACTTGCATTTTGTTGTCATTTTTTCTCCCCTTCAATTCACTTTTCTTTGGCTTTGTTCACCTTAATTTAATTTATTGATGTAATTTGAATTTTGTTGCCACGAAGGATGGTTCCAACAAAGTCCTGGTGTGTTTTGCTTTTAGTTCAATGATTTACCATTATAATTGAATATAAAATTATATTATAT
>Glyma03g35000.1 sequence type=CDS gene model=Glyma03g35000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAGTGAGAACCAGAACAACCAGTTGGTGGTGCAGAATTCGGGGAGCCTGAGCTTCAGCAGCCATTTGTCGAAGGAAGACGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAGAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTAGGTCGAGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGGAATATCAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTCAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGGGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCGATGCAATGA >Glyma03g35000.2 sequence type=CDS gene model=Glyma03g35000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAGTGAGAACCAGAACAACCAGTTGGTGGTGCAGAATTCGGGGAGCCTGAGCTTCAGCAGCCATTTGTCGAAGGAAGACGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAGAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTAGGTCGAGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTCAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGGGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCGATGCAATGA >Glyma03g35000.3 sequence type=CDS gene model=Glyma03g35000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAGTGAGAACCAGAACAACCAGTTGGTGGTGCAGAATTCGGGGAGCCTGAGCTTCAGCAGCCATTTGTCGAAGGAAGACGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAGAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTAGGTCGAGTCGAAGAAGAAACTAAGCGTCTTGCAACCATTCGTGAGGAGCTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGAATTGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATACCTGCCAGAAGAAGGTGAAGTTTATTGAATTTCTCAGAAAACCATTAATACTCGGTTGA
>Glyma03g35000.1 sequence type=predicted peptide gene model=Glyma03g35000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQSENQNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREEYQELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEKNREKVQLITKLMELVGESERLRMKKLEELSKNIDSMQ* >Glyma03g35000.2 sequence type=predicted peptide gene model=Glyma03g35000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQSENQNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEKNREKVQLITKLMELVGESERLRMKKLEELSKNIDSMQ* >Glyma03g35000.3 sequence type=predicted peptide gene model=Glyma03g35000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQSENQNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKVKFIEFLRKPLILG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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