Glyma03g34980 - SoyBase

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Report for Sequence Feature Glyma03g34980

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42280176
stop:	42281510
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36430	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF247) \| chr2:15290211-15291557 FORWARD LENGTH=448	SoyBase	E_val: 1.00E-174	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03140	PFAM	Plant protein of unknown function	JGI		ISS
UniRef100_I1JPY1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JPY1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FK84	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB72473.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FK84_ARATH	SoyBase	E_val: 1.00E-102	ISS

Expression Patterns of Glyma03g34980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g34980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g191900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g34980

Limit To All Plant Sequences

>Glyma03g34980.1   sequence type=CDS   gene model=Glyma03g34980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGAAGCCAATCACCACGCAATAGACATCTCAAATATAATAGACAGAGAGAGGCTTGCTTCGATGGAGCTCAAGATTTCGGAGAATCCCAAGTTTCTATGCAAAGCCGCGGGGAAGAGATCTTGCTGCATCTTCCGGGTCCCACAGAGCCTAGTTGAGGTAAACGGAAAAGCTTATCAACCTCGTATCGTGTCGATAGGACCATATCACCGTAACCAACCTCGCCTCAACATGATCGAGGAGCACAAGTGGCGTTACCTCGGTTCCCTTCTCTCCAGAACAAACACCATCGGTTTCGTTCTAGAAGATTTGTTCAAAGCCATTGCACCCTTAGAATCCGAAGCCAGAGAGTGCTACTCCGAAACCATCAACCTCGACTCTCACGACTTCATCCAAATGATGATCCTCGATGGCTGCTTCATCATTGAGCTCTTTCGCAAAGTCGCCAGATTAGTACCCTTTGAACGCGAAGACCCTCTTCTCACCATGGTGTGGATATTACCCTTCTTTTACAGAGACTTTCTCAAGCTTGAAAATCAAATCCCCTTTTTCATTCTGAACCAGTTATACCAAGTTACAAAACTACCCGGAGAAAAGTCAACGCCAACACTGTCAACTCTCGCGTTGCTCTTCTTCAACAACTCGTTGCAAAAGCCAGACGAATCCTTGCAAAACGACGTGCAGGGAAAGCATTTACTTGACTTGGTTCGTTCGAGTTTCATTCCCAAAAACGATGAAGAAACAGAGCCACGAAAAAGAGTCATGACGCCAACGCACGTGATCCTCTGCGTGTCGAAGCTTCGTCGCGCAGGGATTAAAATTAATCCAAGCAAGGAAAGTGAGAGTTTTCTGAACGTGAAGTTCAGGCGCGGCGTGATTGAAATGCCAAGCCTTACGGTGGATGATTTCATGAGCTCTTTTTTGCTGAACTGCGTTGCGTTAGAGCAGTGCTACAGCGGTTGCTCGAAGCACTTCACTGCCTATATTACCCTCTTGGACTGTCTCGTAAACACGTATAGGGACGTTGAGTATTTGTGCGATCGGAACGTGGTTGAGAACCACCTTGGGACGGAGGGGGAAGTTGCAAGCTTCATAAACAACGCGGGAAAGGATGTGGCGGTTGATTTGGACTTGTGTTACTTGTCACTATTGTTCAATGATGTTCACAAATATTATATAAATAGTTGGCATGTTCAGTGGGCTAGCTTCAAGCACACTTACTTTGATACGCCCTGGTCCTTCATCTCGCTTCTCGCCGCCTCCATTTTGCTGCTTCTTACCGTGGCTCAGACTTACTTTTCGGCTTCTCAGTATTTTCATCAGACTTAA

Predicted protein sequences of Glyma03g34980

Limit To All Plant Sequences

>Glyma03g34980.1   sequence type=predicted peptide   gene model=Glyma03g34980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEANHHAIDISNIIDRERLASMELKISENPKFLCKAAGKRSCCIFRVPQSLVEVNGKAYQPRIVSIGPYHRNQPRLNMIEEHKWRYLGSLLSRTNTIGFVLEDLFKAIAPLESEARECYSETINLDSHDFIQMMILDGCFIIELFRKVARLVPFEREDPLLTMVWILPFFYRDFLKLENQIPFFILNQLYQVTKLPGEKSTPTLSTLALLFFNNSLQKPDESLQNDVQGKHLLDLVRSSFIPKNDEETEPRKRVMTPTHVILCVSKLRRAGIKINPSKESESFLNVKFRRGVIEMPSLTVDDFMSSFLLNCVALEQCYSGCSKHFTAYITLLDCLVNTYRDVEYLCDRNVVENHLGTEGEVASFINNAGKDVAVDLDLCYLSLLFNDVHKYYINSWHVQWASFKHTYFDTPWSFISLLAASILLLLTVAQTYFSASQYFHQT*

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