SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03680 | AT | Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein | chr5:957858-960760 FORWARD LENGTH=591 | SoyBase | E_val: 4.00E-138 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pattern specification process | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0046621 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of organ growth | SoyBase | N/A | ISS |
| GO:0048438 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral whorl development | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0048441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal development | SoyBase | N/A | ISS |
| GO:0048442 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal development | SoyBase | N/A | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0048498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: establishment of petal orientation | SoyBase | N/A | ISS |
| GO:0048519 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process | SoyBase | N/A | ISS |
| GO:0090428 | GO-bp | Annotation by Michelle Graham. GO Biological Process: perianth development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG4282 | KOG | Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain | JGI | ISS | |
| UniRef100_B9SRH5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SRH5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339604 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339604 related cluster n=1 Tax=unknown RepID=UPI0002339604 | SoyBase | E_val: 0 | ISS |
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Glyma03g34960 not represented in the dataset |
Glyma03g34960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g37660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g191700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g34960.1 sequence type=CDS gene model=Glyma03g34960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGGAGGACCATCATCGTCACCATCATCAGTATGGCATCACTGATCTGAGGCAACTCGTTAACGGCCCTCGGCCGACTCATTTCCCCACCATGCCGCCACCGCCCAAGGCGGAGCTGTTCCCCGGCGACTCCAACCTGCAGGCTGCGACACAACAACACTACGAGATGATGATGTTTGGTCGTCAAGTAGCCGACATAATGCCTCCTCGTTGTCTTCATGACTTCGCCTCCACCGATTCCGCCACCAACATCGCCGTTGCCACTCCCACCACCACCCCTAGCGCCTCCACTCCTCCGCTTAGTTGCTTAGAGGCCGAGACCGCAGGATGCATCGGTGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTCCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGTCCCTTATGGGATGAAGTTTCTAGGAACATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAGACAAAGGAAGGAAAAGCTGGAAGACAAGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAGCCTCGGTGCCAGAAACCAATTTTGGCAGTGGTAGCCTTCGTTTCCACACAAGCAGCCACAATAATAACCCTTCTCAAACAAATCAAGAAATGTTTCAGTCTCAGAAGCATTGTGACAGCCTAAGCCTCACCAACTCCACTGATTTGGACACTTCATCATCGGATGACAATGATCAAAATAGCACTGGCAGGGAACTCAACAAGGACAATGACTCCATGGAGAAGAGGAGAAAGAGGGTGAGTGGAAGAAGCTGGAAGGTGAAGATAAAGGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACAAAGACACTGGAACAGAAGGAAAAAGAGAGAGTGTTAAGAGAAGAAGAGTGGAGGAGACAAGAATCTGTAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAGGCTTTGCACAAATTAACACGAAATGAGATAATGAAGAGTACTCATTCTCACGAGGGTCTAATGGTAACTGGAATTCAAATCCACAGTGAAAACCAGAATGAAGATGGGAGTGAAATACTAAATAGCACTGCTGCCAGAGGTGCTGAAAGCTGGCCAGAATCTGAGATTGCAAGGCTTCAACAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTTTTCAGAAGAGGTTATGTGGGAGGAAATAGCTACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTGGTATTCAAAGAGAAATGGGAAAGTATAAGCAGCAACTATGCAAGGAGTGCCAAGGATGGAAGCAAGAAGCGCAAGGAAGACTCAAGAAGTTGTTTTTACTTCGATAACAGTGACCAATCTTCTCTGTATAACCAAGGAGGTGCCTATTGTGATATCAATGATCAAAGGCACGAGACTGGGAGGCTGCAAACAAATGACGGTTCTTCACCTTCCAATTCAAATGTTGGAAATGCAGTTGCGGGTGATAACTGCTTTCCCTTCTTGATGACTGAGGGTGGAAATTTGTGGGAGAACTATAGCTTAAAGGTTAATAAAGCATGCCAAAACCAGTGA
>Glyma03g34960.1 sequence type=predicted peptide gene model=Glyma03g34960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMEDHHRHHHQYGITDLRQLVNGPRPTHFPTMPPPPKAELFPGDSNLQAATQQHYEMMMFGRQVADIMPPRCLHDFASTDSATNIAVATPTTTPSASTPPLSCLEAETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRNMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFGSGSLRFHTSSHNNNPSQTNQEMFQSQKHCDSLSLTNSTDLDTSSSDDNDQNSTGRELNKDNDSMEKRRKRVSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQESVRLEREHKFWAKERAWIEARDAALMEALHKLTRNEIMKSTHSHEGLMVTGIQIHSENQNEDGSEILNSTAARGAESWPESEIARLQQLRAEMETRYMQSGFSEEVMWEEIATKMACFGYERSALVFKEKWESISSNYARSAKDGSKKRKEDSRSCFYFDNSDQSSLYNQGGAYCDINDQRHETGRLQTNDGSSPSNSNVGNAVAGDNCFPFLMTEGGNLWENYSLKVNKACQNQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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