Glyma03g34950 - SoyBase

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Report for Sequence Feature Glyma03g34950

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42241165
stop:	42244276
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36460	AT	Annotation by Michelle Graham. TAIR10: Aldolase superfamily protein \| chr2:15296929-15298387 REVERSE LENGTH=358	SoyBase	E_val: 0	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004332	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fructose-bisphosphate aldolase activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
KOG1557	KOG	Fructose-biphosphate aldolase	JGI		ISS
PTHR11627	Panther	FRUCTOSE-BISPHOSPHATE ALDOLASE	JGI		ISS
PF00274	PFAM	Fructose-bisphosphate aldolase class-I	JGI		ISS
UniRef100_I1JPX8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Fructose-bisphosphate aldolase n=1 Tax=Glycine max RepID=I1JPX8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JPX8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fructose-bisphosphate aldolase n=1 Tax=Glycine max RepID=I1JPX8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g34950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34950

Paralog	Evidence	Comments
Glyma19g37640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g191500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g34950

Limit To All Plant Sequences

>Glyma03g34950.1   sequence type=CDS   gene model=Glyma03g34950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCTTCAAGAGCAAGTACCAAGATGAACTCATTGCCAATGCTGCTTACATTGGCACCCCAGGGAAGGGTATCCTTGCTGCTGATGAGTCAACTGGTACAATTGGCAAGCGATTGGCCAGCATTAATGTCGAGAATGTTGAAGCAAATAGGCGTGCTCTTCGTGAACTCCTATTCACCACACCTGGTGCTTTTGAGTGCCTCAGTGGTGTGATCTTGTTTGAGGAAACCCTATACCAAAAGACAGCTTCAGGAAAACCCTTCGTAGAGTTGATGAAGGAAGGAGGAGTTCTCCCTGGTATCAAGGTTGACAAGGGCACAGTAGAGCTTGCAGGAACTAATGGGGAGACTACTACTCAAGGTTTGGATGGCCTTGGCGCCCGATGCCAGAAGTACTATGAAGCCGGTGCCCGTTTTGCCAAATGGCGTGCTGTGCTCAAGATCGGCCCAAACGAACCATCCGAGCTGGCTATCCATGAAAATGCCTACGGTCTTGCCCGATATGCCGTCATATGCCAGGAGAATGGTCTGGTACCTATTGTAGAGCCAGAGATCCTGGTGGATGGACCTCATGACATCAACAAGTGTGCTGAGGTGACCGAGCGCGTTCTTGCAGCATGCTACAAGGCTCTAAATGATCACCATGTTCTGCTTGAGGGCACTCTGTTGAAGCCCAACATGGTCACCCCTGGTTCAGAGTCTAAGAAGGTCACCCCAGAGGTGATTGCTCAATACACTGTTACAGCTTTGCAGCGAACTGTTCCCGCTGCTGTTCCGGCCATTGTCTTCTTGTCTGGTGGGCAGAGCGAGGAGGAGGCAACCCTCAACCTCAACGCCATGAACAAGTCCCAGGGAAAGAAGCCGTGGTCCCTTTCTTTCTCTTTTGGAAGGGCACTTCAGCAAAGCACTCTCAAGGCATGGGGTGGGAAAGATGAAAACATTAAGAAGGCTCAGGATGCTTTATTTGCCAGGTGCAATGCAAACTCACATGCAACTTTGGGAACTTACAAAGGTGATGCTACCCTTGCTGAGGGTGCCTCCGAGTCTCTCCATGTCAAGGACTACAAATACTAA

Predicted protein sequences of Glyma03g34950

Limit To All Plant Sequences

>Glyma03g34950.1   sequence type=predicted peptide   gene model=Glyma03g34950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSFKSKYQDELIANAAYIGTPGKGILAADESTGTIGKRLASINVENVEANRRALRELLFTTPGAFECLSGVILFEETLYQKTASGKPFVELMKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLGARCQKYYEAGARFAKWRAVLKIGPNEPSELAIHENAYGLARYAVICQENGLVPIVEPEILVDGPHDINKCAEVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSESKKVTPEVIAQYTVTALQRTVPAAVPAIVFLSGGQSEEEATLNLNAMNKSQGKKPWSLSFSFGRALQQSTLKAWGGKDENIKKAQDALFARCNANSHATLGTYKGDATLAEGASESLHVKDYKY*

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