Glyma03g34940 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g34940

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42236603
stop:	42238551
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27770	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF868) \| chr2:11833089-11834051 REVERSE LENGTH=320	SoyBase	E_val: 1.00E-86	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF05910	PFAM	Plant protein of unknown function (DUF868)	JGI		ISS
UniRef100_C6TJN8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJN8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SJQ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9SJQ8_ARATH	SoyBase	E_val: 8.00E-72	ISS

Expression Patterns of Glyma03g34940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34940

Paralog	Evidence	Comments
Glyma19g37630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g191400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g34940

Limit To All Plant Sequences

>Glyma03g34940.3   sequence type=transcript   gene model=Glyma03g34940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCAATGCCTTATGACTTATATATATTTGCTATCAAACCCATAATTAACACGGAAATACAATTGACAATGTTTTTAATTATAATATATAGGGTCAAACCATAACTAATCACAATTTAATTACATTGAGTGATGGCAAGAGAAGCTTAACGTAACGTAAGCAATTTAAGATACAGTAGTCATTTCATTTGTTTTAGTAGTTTTCAATTTTCATCCCCTATACTGGTACTAGAAGCAAATTTTTAATTAATTTTAAAGGCATGCCAGAAAAACAGAAAGGACATTTCACACATGGAAAATCCCAGGAAGAGAAACTGCCCCTTGTCTTTTGTTACCTTCAAATTCAATCCTTCGCTGTCTCTCTCTCTCTCTCTCACACACACACACACAGACGGTGCTAGCTAATTCTTTCTATTCCTTCCATCATATGCAAGCACAAGCGTAACCAGCGACCTTACTTTCTTTTCTTCTTTCATTACAAAATTGTCTTGATCCTTTTCATTTTTTCATGTCGGTTTATTTTTGAACCCCAAAGGTAGAACCTTTCTTTACTTTTTAATAATTATAATGAGAAGCATAGCATCTTGTTACAACGAACATGCAATTAGAGTGTCTGATTCATATTGCTCAAGGCCTTCAACCCAGGCCTATCTCGGTCCAAAACTTCACCCTTCCACCAGAGATTCTGTAACCTGCATGTACAAACTCACCCTCATCGAAACGCAAAAACAACTCTTTATTACGCTTACTTGGTCCAAGAAACTCTTGGGCCAAGGCTTCACCATAACCATCGCCAATTCCGAACACTCTCTTTCTCCCTCTAAATCCAACGCAAGACAATTGAGAAAAATCAAAGGCAACGAAACACTCCAATCCCAAAATTTCAAAGTCCAAGTCCTGTGGGATCTCTCCGATGCAAAGTACGAGGAAGGACCAGAACCCGTTGGTGCGTTTTACGTAGTCGTTTTGGTGGACTCCGAACTGGGCCTACGCCTTGGCGACAAAAATTCTTTAATTGAAGAATTGTTATCAAACCTGGACGCAAAAGAAGCGAATTTCTCGTTGGTTTCACGGAGCGAGACGTTTTCCGGCACCGCGGTTTACGCGACGAAGGCGAAATTCTCGGAGACGGGAATATCTCACGAGATATTGATAAAGTGCGGCGCGGAGGTGGTCGAGGGGGGAGAGGCGAAGAAGGGTCACGTGTTGTCCGTGTGCGTGGACAAGAAGACAATTTTCCAGGTTAAGAGGCTGAGGTGGAACTTTCGTGGGAACCAAACTATTTTTGTCGATGGTTTGGTCGTGGATATGATGTGGGACGTGCACGATTGGCTTTTCAATTCGAATTCTGCTTCATCTGCAGTGTTCATGTTCAGGACAAGGAGTGGCCTCGATAGTAGATTATGGTTGGAGGAGAAGAGTTTGCACGCGCACAAGGAACAGGACAAAATTGGTTTCTCTTTGTTGATTTGTGCCTGTAAGAACAATGACTGATTCAATCTTTTTTTCACTTTTAATTCATCTGGATTTTATAGGATTGAAAAAACTGACACCTGTTTATATTTTTCTTCTTCTTCTTAATCTTAGTATCTGTCGATGATATTTGGTTAGTGGTCATGTAATCGTGACCCTTTGAACCAGAATAGATGAAAGTTTATAGATTATATTAATTATTTGTATCGTTGAAGTATTTTTATTTTTCTTGCACGAAACATTGTTCGGCTGAGATATGTATTAAAATTGTCAGAAACATATTCTCACCTTTTATCCAAATATGACAGTAAATATCTATCTCTAGATGTACAAATTGTGGTTCTAAACAAGCTTAGGTGATTCTTTGCAATTTTTGCATTCTTTT

Coding sequences of Glyma03g34940

Limit To All Plant Sequences

>Glyma03g34940.2   sequence type=CDS   gene model=Glyma03g34940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGCATAGCATCTTGTTACAACGAACATGCAATTAGAGTGTCTGATTCATATTGCTCAAGGCCTTCAACCCAGGCCTATCTCGGTCCAAAACTTCACCCTTCCACCAGAGATTCTGTAACCTGCATGTACAAACTCACCCTCATCGAAACGCAAAAACAACTCTTTATTACGCTTACTTGGTCCAAGAAACTCTTGGGCCAAGGCTTCACCATAACCATCGCCAATTCCGAACACTCTCTTTCTCCCTCTAAATCCAACGCAAGACAATTGAGAAAAATCAAAGGCAACGAAACACTCCAATCCCAAAATTTCAAAGTCCAAGTCCTGTGGGATCTCTCCGATGCAAAGTACGAGGAAGGACCAGAACCCGTTGGTGCGTTTTACGTAGTCGTTTTGGTGGACTCCGAACTGGGCCTACGCCTTGGCGACAAAAATTCTTTAATTGAAGAATTGTTATCAAACCTGGACGCAAAAGAAGCGAATTTCTCGTTGGTTTCACGGAGCGAGACGTTTTCCGGCACCGCGGTTTACGCGACGAAGGCGAAATTCTCGGAGACGGGAATATCTCACGAGATATTGATAAAGTGCGGCGCGGAGGTGGTCGAGGGGGGAGAGGCGAAGAAGGGTCACGTGTTGTCCGTGTGCGTGGACAAGAAGACAATTTTCCAGGTTAAGAGGCTGAGGTGGAACTTTCGTGGGAACCAAACTATTTTTGTCGATGGTTTGGTCGTGGATATGATGTGGGACGTGCACGATTGGCTTTTCAATTCGAATTCTGCTTCATCTGCAGTGTTCATGTTCAGGACAAGGAGTGGCCTCGATAGTAGATTATGGTTGGAGGAGAAGAGTTTGCACGCGCACAAGGAACAGGACAAAATTGGTTTCTCTTTGTTGATTTGTGCCTGTAAGAACAATGACTGA

>Glyma03g34940.3   sequence type=CDS   gene model=Glyma03g34940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGCATAGCATCTTGTTACAACGAACATGCAATTAGAGTGTCTGATTCATATTGCTCAAGGCCTTCAACCCAGGCCTATCTCGGTCCAAAACTTCACCCTTCCACCAGAGATTCTGTAACCTGCATGTACAAACTCACCCTCATCGAAACGCAAAAACAACTCTTTATTACGCTTACTTGGTCCAAGAAACTCTTGGGCCAAGGCTTCACCATAACCATCGCCAATTCCGAACACTCTCTTTCTCCCTCTAAATCCAACGCAAGACAATTGAGAAAAATCAAAGGCAACGAAACACTCCAATCCCAAAATTTCAAAGTCCAAGTCCTGTGGGATCTCTCCGATGCAAAGTACGAGGAAGGACCAGAACCCGTTGGTGCGTTTTACGTAGTCGTTTTGGTGGACTCCGAACTGGGCCTACGCCTTGGCGACAAAAATTCTTTAATTGAAGAATTGTTATCAAACCTGGACGCAAAAGAAGCGAATTTCTCGTTGGTTTCACGGAGCGAGACGTTTTCCGGCACCGCGGTTTACGCGACGAAGGCGAAATTCTCGGAGACGGGAATATCTCACGAGATATTGATAAAGTGCGGCGCGGAGGTGGTCGAGGGGGGAGAGGCGAAGAAGGGTCACGTGTTGTCCGTGTGCGTGGACAAGAAGACAATTTTCCAGGTTAAGAGGCTGAGGTGGAACTTTCGTGGGAACCAAACTATTTTTGTCGATGGTTTGGTCGTGGATATGATGTGGGACGTGCACGATTGGCTTTTCAATTCGAATTCTGCTTCATCTGCAGTGTTCATGTTCAGGACAAGGAGTGGCCTCGATAGTAGATTATGGTTGGAGGAGAAGAGTTTGCACGCGCACAAGGAACAGGACAAAATTGGTTTCTCTTTGTTGATTTGTGCCTGTAAGAACAATGACTGA

Predicted protein sequences of Glyma03g34940

Limit To All Plant Sequences

>Glyma03g34940.2   sequence type=predicted peptide   gene model=Glyma03g34940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSIASCYNEHAIRVSDSYCSRPSTQAYLGPKLHPSTRDSVTCMYKLTLIETQKQLFITLTWSKKLLGQGFTITIANSEHSLSPSKSNARQLRKIKGNETLQSQNFKVQVLWDLSDAKYEEGPEPVGAFYVVVLVDSELGLRLGDKNSLIEELLSNLDAKEANFSLVSRSETFSGTAVYATKAKFSETGISHEILIKCGAEVVEGGEAKKGHVLSVCVDKKTIFQVKRLRWNFRGNQTIFVDGLVVDMMWDVHDWLFNSNSASSAVFMFRTRSGLDSRLWLEEKSLHAHKEQDKIGFSLLICACKNND*

>Glyma03g34940.3   sequence type=predicted peptide   gene model=Glyma03g34940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSIASCYNEHAIRVSDSYCSRPSTQAYLGPKLHPSTRDSVTCMYKLTLIETQKQLFITLTWSKKLLGQGFTITIANSEHSLSPSKSNARQLRKIKGNETLQSQNFKVQVLWDLSDAKYEEGPEPVGAFYVVVLVDSELGLRLGDKNSLIEELLSNLDAKEANFSLVSRSETFSGTAVYATKAKFSETGISHEILIKCGAEVVEGGEAKKGHVLSVCVDKKTIFQVKRLRWNFRGNQTIFVDGLVVDMMWDVHDWLFNSNSASSAVFMFRTRSGLDSRLWLEEKSLHAHKEQDKIGFSLLICACKNND*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain