Glyma03g34930 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g34930

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42223178
stop:	42224647
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03700	AT	Annotation by Michelle Graham. TAIR10: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain \| chr5:965874-967322 REVERSE LENGTH=482	SoyBase	E_val: 1.00E-161	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0048544	GO-bp	Annotation by Michelle Graham. GO Biological Process: recognition of pollen	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
PTHR11795	Panther	PROTEIN KINASE	JGI		ISS
PTHR11795:SF323	Panther	FIBROBLAST GROWTH FACTOR RECEPTOR-RELATED (PTK GROUP XV)	JGI		ISS
PF00024	PFAM	PAN domain	JGI		ISS
PF00954	PFAM	S-locus glycoprotein family	JGI		ISS
PF01453	PFAM	D-mannose binding lectin	JGI		ISS
UniRef100_G7L503	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PAN domain-containing protein n=1 Tax=Medicago truncatula RepID=G7L503_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JPX6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPX6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g34930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34930

Paralog	Evidence	Comments
Glyma19g37621	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g191300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g34930

Limit To All Plant Sequences

>Glyma03g34930.1   sequence type=CDS   gene model=Glyma03g34930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAAACTCGTCACCCCCAATTTCTAGCGATTATTCCCTTTCTCTTTTTATATACTTTGACATGCTCCGAAACCGCAACAACCACTTCCATCCCACAAGAGCTTCACATAGGCTTCTCGGCGACGGCAGAGTCTTCAACGACGCCGTTTCAGGCAGTTCTGAGCGACCATAGTGGCAACTTCTCTCTAGGCTTCCTCCGCGTGAACCAAAACCAGCTGGCACTGGCGGTCCTCCACGTGGCATCCTCGGAGCCATTCTGGGTGGCCAACCCAACCCACGCAGCATCCTGGTCCGACACCACGCGCCTCTTCTTCAACGGCAGTCTTGTTTTGTCAGACCCCGAAACGCGCGTTTCGTGGTCAACCGCCACAAACAACGGCGACCGCGTGGTGCTCCTCAACACCTCCAATTTACAAGTTCACGACAAAGGCGGCACTCCCTTGTGGCAGAGTTTTCACTTTCCCGCAAATACCCTCGTCCAGGACCAGAATTTCACCTCCAACATGACTCTTTTGTCCTCCAACGGCATTTATTCTATGCGGTTAGGCAACGATTTCATGGGCCTATACGAAAACCACGACTCGTTATATTGGAAACGCACGCCACTGGGAGCAAAAGCGGAAGTAAAGGAAGGGCAGGGACCGATTTACGCCCGAGTCAACCCGGAGGGTTACCTCGGGATGTATCAGACAAGCGACGAGAAGCCCGCGGATGTTCAAAAGTTCAACACGTTCCAACTAACGTCGTCGTTTTTGTTGCTGCGGTTGGAACCGGACGGGAATCTGAAGGGTTATTACTGGGACGGTTCCAGGTGGATGCTTAACTACCAGGCGATTACTGAAGCCTGCGAGCTCCCCCGCTCCTGCGGTTCGTACGGTTTGTGCACGCCGGGTGGGTCAGGATGCTCCTGTTTAGATAACCGAACCCGGTTCGAACCGGGTGGGTGTTTTAATGATGCTTCTTCTGGAGACGCAGACTTGTGTAGTAGTGAAGGAATTGGTGGAAAAAGTAGTTACTGGGTGCTAAGAAGAACCGGAGTGGAGGCAGCGCATAAGGAGCTACTAAGGCACGTAACGACGTCGTCTCTGGCGGAGTGTGAGGGATTGTGCCAGAACAACTGTAGCTGTTGGGGGGCGCTGTATAGCAACGAAACCGGGTTTTGTTATTTGTTGGAGTATACGATCCAGACCTTGCTGGGTACCGGGGATGGATCAAAAGTGGGTTATTTCAAGGTTAAGAAAGAGGAACGAAGAACGAAACGGGTTTGGATACGGGTTGGGGTTGTGGTTACGGTTTTGGTTGGGGTTGGGGTTATTATTATTGGGGTCGGGTTTTGCGTGACGAGATGGAAAAAGAAGAGAGGGGTGAAGGAAGAGGATTGGGGTTCGCCCGGCCCGTATAAGAATCTCGAATCCGCAAGTTTTAGATCCATTGAAATGAGCAATAGTAACAGTGCCAACGAATGA

Predicted protein sequences of Glyma03g34930

Limit To All Plant Sequences

>Glyma03g34930.1   sequence type=predicted peptide   gene model=Glyma03g34930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQTRHPQFLAIIPFLFLYTLTCSETATTTSIPQELHIGFSATAESSTTPFQAVLSDHSGNFSLGFLRVNQNQLALAVLHVASSEPFWVANPTHAASWSDTTRLFFNGSLVLSDPETRVSWSTATNNGDRVVLLNTSNLQVHDKGGTPLWQSFHFPANTLVQDQNFTSNMTLLSSNGIYSMRLGNDFMGLYENHDSLYWKRTPLGAKAEVKEGQGPIYARVNPEGYLGMYQTSDEKPADVQKFNTFQLTSSFLLLRLEPDGNLKGYYWDGSRWMLNYQAITEACELPRSCGSYGLCTPGGSGCSCLDNRTRFEPGGCFNDASSGDADLCSSEGIGGKSSYWVLRRTGVEAAHKELLRHVTTSSLAECEGLCQNNCSCWGALYSNETGFCYLLEYTIQTLLGTGDGSKVGYFKVKKEERRTKRVWIRVGVVVTVLVGVGVIIIGVGFCVTRWKKKRGVKEEDWGSPGPYKNLESASFRSIEMSNSNSANE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain