Glyma03g34910 - SoyBase

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Report for Sequence Feature Glyma03g34910

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42207954
stop:	42214222
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36480	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS family protein \| chr2:15303114-15306274 REVERSE LENGTH=830	SoyBase	E_val: 1.00E-78	ISS
GO:0006310	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA recombination	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0032204	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance	SoyBase	N/A	ISS
GO:0043247	GO-bp	Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2071	KOG	mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11	JGI		ISS
PTHR15921	Panther	PRE-MRNA CLEAVAGE COMPLEX II	JGI		ISS
PF04818	PFAM	Protein of unknown function, DUF618	JGI		ISS
UniRef100_G7L500	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA cleavage complex 2 protein Pcf11 n=1 Tax=Medicago truncatula RepID=G7L500_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233718B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233718B related cluster n=1 Tax=unknown RepID=UPI000233718B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g34910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34910

Paralog	Evidence	Comments
Glyma19g37610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g191200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g34910

Limit To All Plant Sequences

>Glyma03g34910.2   sequence type=CDS   gene model=Glyma03g34910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGGAGAGCACGCGCAGATCGTTGGACAGATCCAGAGAACCAGGTCCCAAGAAGCCTCGATTGATCGACGAACTCAGCGCCCGACAGTTACCTCAACGCACTGCGGCAGTTACTACGCTGGCGTCTACGAGGTTTCGAGCAAATGACAGAGACTCCGAAATCAGCGATTTGGGTCGTGGCGGTGGCGGCGGCGGGTATCAGCCGCAGCCTCCGCCGCACCAAGAGCTTGTGACTCAATACAAGACCGCACTTGCTGAGCTCACTTTCAATTCGAAGCCGATAATTACCAACTTGACTATTATTGCAGGAGAGAATCTCTCTGCTGCCAAGGCAATTGCTGCTGCTGTTTGTGCTAACATTATAGAGGTTCCAAGTGATCAAAAACTGCCATCTCTTTACCTCTTAGACAGTATTGTTAAGAACATTGGACGGGATTATATAAAGTATTTTGCTTCCAGACTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTTGTGTGCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTCCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCAGTCAATGGTTCGGCTTCAGTGTCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGAGCAAAGGAGTAGTTAGTGATATGACTGGAGCTGTTTTAAACTCAAATGAGGATTCGGAGAGGCCAGATAGAGCTGCTGCACGACCCTGGCTGGATCCGAGGATTAACATGCTTAATAATCAGCACACACACAGAGATGCATTTAATGATTCTGTTACTGAAAAGAGCATTGATGGATCATACGGAAGCAGTGAATATAGTTCTGTCATTTCAAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAAGTAAGCTCATTGATTTAGGACATGACAAAACATGGTTCAAAACAGATGGGGGTGATGCAGATACTACATCTGGGCAAAGAAATGGTTTTGGTCTCAAGCGTAGTTTTTCAAATCAAGAAGCACCAAAGTCCATGAATTTGGATGCACATCGTCAGCCAAGACAAAGCATAACTAACTTACGGAACAATGTGATGTCAGGTAACTGGAAAACTTCTGAAGAAGAGTTCACGCGGGATGAGATGAACAATGGTTTGATTGATCATGGACCCAATGTATTAAGCAATTTGAGCACAGACACATGGATGGCTGATGATGAAAATTTGGAAGGTGAAGATCACCTCCACCTCCAAATCACACGCCCAATTGGGACAAAGGTCGATAGAGAAATATCCACTGTTAAGAAACAACTACCTGGTTTGGGGGGCCATCCACCATCATCATGGCAATTGCAGAAGCACCACTCAATTGATAAGTTGAATCTAAAGCCAGATTACTCTGAAGGATTTGTGTCCACTCTTAGTGGCTTACCAACCAATGCAAGTTCTTTGGCTGTCAAGAAGGGGAACCAATCCTTTATGTCCAATGCAGTAGTAGGAATGACCAAATTTGTGGGACAACAATTTGATTCGGGTGAAACTGAATCCCCTTCTGGGCAGTCACCTTTGCGGCAACAGTCTCCATCACTGCCAGGAACAGTACACCACCCTCATTCAATGCAAAACTTGGCTAACCAAGAATTGCCACCGAGTCTCAAAACCTCTCAACTTTTGGGAGGTCAGATAATCAGTCAGCATATTAGAGATCACTCACCTACCCTTCGTCCCATTGTAAAGGTTGGTAACTTGCGAAGATCACAAGAAAAGGATATGCAGGGCCCATTATCTTCCATGACCTCTCTTCGACCAAAGCTTCAGCAAAAGCAGCTGAACCCATCTCAGACTGAAGTTACTGCTACAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAGAGAAACTTCAGAACAGTTGACCACAAATAATTTGTCAGCTGCACCTGTCAAAACTGGAATCATCCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCGTCCATCTCAGACTGGGGTTCAGCCTACTCAGTCTGGTAGGCCTACCACATTAATTTCTTCAGGGTCTGCTGTGGCATCACCATCTTCATTAGATCCTCTGCATAATGATTCATCTACACTGCCAAAAAAACCTAAAGGAAAGGCTGGACAACCACCACAAAGGCTTTCTACTCAACCACCTGCTTCCTCTAATGTTAGCAGTTCCTCAGCTCCGATCTTAAATGCGGCCAAAAATAATAAACCAAATCCAATTGCAAACCTTTTAAGCACATTGGTTGCAAAGGGTTTGATATCTGCCGAAACAGAATCACCAACTACGGTACCAAGCGTGGCACCAAAGGGATCCAAAGATCAAACTGAGATCATTACCACCAGTTGTTCTTTACCAGTTACATCAATTTCTGGTTCTGCAGCTGTCCCAGTATCGTCTTCCGATGATGAGGTAGATGCTGCTACAAAAACCTGTCTTGCCTCACCTCAATCAACTAGCACGGAAATCAGAAATCTCATTGGCTTTGATTTTAGACCTAATGTAATTCGAGAATTCCACCCATCTGTAATTAGGGAATTATGGGATGATATCCCTCATCATTGCAAAGTTTGCGGTATTAAGCTTAAACAAGAAGAACTCTTTAATAGACACTTGGAGTGGCATGCCACAAGAGAACATGGTCCAATTAAGGCATCAAGAAGTTGGTATGCGAAGTCAAGTGATTGGATTGCTGGCAAGGCAGAATATTCATCTGAGTCCGAGTTTAATGATTCTGTTGATGTACACGATGAAAAAACAGGCAGCAGTCAATTGGATACGATGGTTCTAGCAGATGAAAACCAGTGTCTGTGTGTATTGTGCGGCGAGCTATTTGAAGATGTGTACTGTCATGAAAGGAATGAGTGGATGTTCAAAGGGACCATTTACATGAACTATTCAGATGTCAATAGTGAGATGGAAAGTGGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATCATCACCAATTTGGATAATGATTAA

Predicted protein sequences of Glyma03g34910

Limit To All Plant Sequences

>Glyma03g34910.2   sequence type=predicted peptide   gene model=Glyma03g34910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMESTRRSLDRSREPGPKKPRLIDELSARQLPQRTAAVTTLASTRFRANDRDSEISDLGRGGGGGGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAAAVCANIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVFCKAYRQVDPCVHSSMKHLFGTWKGVFPPQSLQMIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVSDMTGAVLNSNEDSERPDRAAARPWLDPRINMLNNQHTHRDAFNDSVTEKSIDGSYGSSEYSSVISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDADTTSGQRNGFGLKRSFSNQEAPKSMNLDAHRQPRQSITNLRNNVMSGNWKTSEEEFTRDEMNNGLIDHGPNVLSNLSTDTWMADDENLEGEDHLHLQITRPIGTKVDREISTVKKQLPGLGGHPPSSWQLQKHHSIDKLNLKPDYSEGFVSTLSGLPTNASSLAVKKGNQSFMSNAVVGMTKFVGQQFDSGETESPSGQSPLRQQSPSLPGTVHHPHSMQNLANQELPPSLKTSQLLGGQIISQHIRDHSPTLRPIVKVGNLRRSQEKDMQGPLSSMTSLRPKLQQKQLNPSQTEVTATTKLPQSKVSLTRETSEQLTTNNLSAAPVKTGIIPKKSITSNLDPRKRPSQTGVQPTQSGRPTTLISSGSAVASPSSLDPLHNDSSTLPKKPKGKAGQPPQRLSTQPPASSNVSSSSAPILNAAKNNKPNPIANLLSTLVAKGLISAETESPTTVPSVAPKGSKDQTEIITTSCSLPVTSISGSAAVPVSSSDDEVDAATKTCLASPQSTSTEIRNLIGFDFRPNVIREFHPSVIRELWDDIPHHCKVCGIKLKQEELFNRHLEWHATREHGPIKASRSWYAKSSDWIAGKAEYSSESEFNDSVDVHDEKTGSSQLDTMVLADENQCLCVLCGELFEDVYCHERNEWMFKGTIYMNYSDVNSEMESGNVGPIIHAKCLSENSIITNLDND*

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