SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36480 | AT | Annotation by Michelle Graham. TAIR10: ENTH/VHS family protein | chr2:15303114-15306274 REVERSE LENGTH=830 | SoyBase | E_val: 1.00E-78 | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2071 | KOG | mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 | JGI | ISS | |
| PTHR15921 | Panther | PRE-MRNA CLEAVAGE COMPLEX II | JGI | ISS | |
| PF04818 | PFAM | Protein of unknown function, DUF618 | JGI | ISS | |
| UniRef100_G7L500 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA cleavage complex 2 protein Pcf11 n=1 Tax=Medicago truncatula RepID=G7L500_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233718B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233718B related cluster n=1 Tax=unknown RepID=UPI000233718B | SoyBase | E_val: 0 | ISS |
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Glyma03g34910 not represented in the dataset |
Glyma03g34910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g37610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g191200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g34910.2 sequence type=CDS gene model=Glyma03g34910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCATGGAGAGCACGCGCAGATCGTTGGACAGATCCAGAGAACCAGGTCCCAAGAAGCCTCGATTGATCGACGAACTCAGCGCCCGACAGTTACCTCAACGCACTGCGGCAGTTACTACGCTGGCGTCTACGAGGTTTCGAGCAAATGACAGAGACTCCGAAATCAGCGATTTGGGTCGTGGCGGTGGCGGCGGCGGGTATCAGCCGCAGCCTCCGCCGCACCAAGAGCTTGTGACTCAATACAAGACCGCACTTGCTGAGCTCACTTTCAATTCGAAGCCGATAATTACCAACTTGACTATTATTGCAGGAGAGAATCTCTCTGCTGCCAAGGCAATTGCTGCTGCTGTTTGTGCTAACATTATAGAGGTTCCAAGTGATCAAAAACTGCCATCTCTTTACCTCTTAGACAGTATTGTTAAGAACATTGGACGGGATTATATAAAGTATTTTGCTTCCAGACTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTTGTGTGCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTCCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCAGTCAATGGTTCGGCTTCAGTGTCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGAGCAAAGGAGTAGTTAGTGATATGACTGGAGCTGTTTTAAACTCAAATGAGGATTCGGAGAGGCCAGATAGAGCTGCTGCACGACCCTGGCTGGATCCGAGGATTAACATGCTTAATAATCAGCACACACACAGAGATGCATTTAATGATTCTGTTACTGAAAAGAGCATTGATGGATCATACGGAAGCAGTGAATATAGTTCTGTCATTTCAAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAAGTAAGCTCATTGATTTAGGACATGACAAAACATGGTTCAAAACAGATGGGGGTGATGCAGATACTACATCTGGGCAAAGAAATGGTTTTGGTCTCAAGCGTAGTTTTTCAAATCAAGAAGCACCAAAGTCCATGAATTTGGATGCACATCGTCAGCCAAGACAAAGCATAACTAACTTACGGAACAATGTGATGTCAGGTAACTGGAAAACTTCTGAAGAAGAGTTCACGCGGGATGAGATGAACAATGGTTTGATTGATCATGGACCCAATGTATTAAGCAATTTGAGCACAGACACATGGATGGCTGATGATGAAAATTTGGAAGGTGAAGATCACCTCCACCTCCAAATCACACGCCCAATTGGGACAAAGGTCGATAGAGAAATATCCACTGTTAAGAAACAACTACCTGGTTTGGGGGGCCATCCACCATCATCATGGCAATTGCAGAAGCACCACTCAATTGATAAGTTGAATCTAAAGCCAGATTACTCTGAAGGATTTGTGTCCACTCTTAGTGGCTTACCAACCAATGCAAGTTCTTTGGCTGTCAAGAAGGGGAACCAATCCTTTATGTCCAATGCAGTAGTAGGAATGACCAAATTTGTGGGACAACAATTTGATTCGGGTGAAACTGAATCCCCTTCTGGGCAGTCACCTTTGCGGCAACAGTCTCCATCACTGCCAGGAACAGTACACCACCCTCATTCAATGCAAAACTTGGCTAACCAAGAATTGCCACCGAGTCTCAAAACCTCTCAACTTTTGGGAGGTCAGATAATCAGTCAGCATATTAGAGATCACTCACCTACCCTTCGTCCCATTGTAAAGGTTGGTAACTTGCGAAGATCACAAGAAAAGGATATGCAGGGCCCATTATCTTCCATGACCTCTCTTCGACCAAAGCTTCAGCAAAAGCAGCTGAACCCATCTCAGACTGAAGTTACTGCTACAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAGAGAAACTTCAGAACAGTTGACCACAAATAATTTGTCAGCTGCACCTGTCAAAACTGGAATCATCCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCGTCCATCTCAGACTGGGGTTCAGCCTACTCAGTCTGGTAGGCCTACCACATTAATTTCTTCAGGGTCTGCTGTGGCATCACCATCTTCATTAGATCCTCTGCATAATGATTCATCTACACTGCCAAAAAAACCTAAAGGAAAGGCTGGACAACCACCACAAAGGCTTTCTACTCAACCACCTGCTTCCTCTAATGTTAGCAGTTCCTCAGCTCCGATCTTAAATGCGGCCAAAAATAATAAACCAAATCCAATTGCAAACCTTTTAAGCACATTGGTTGCAAAGGGTTTGATATCTGCCGAAACAGAATCACCAACTACGGTACCAAGCGTGGCACCAAAGGGATCCAAAGATCAAACTGAGATCATTACCACCAGTTGTTCTTTACCAGTTACATCAATTTCTGGTTCTGCAGCTGTCCCAGTATCGTCTTCCGATGATGAGGTAGATGCTGCTACAAAAACCTGTCTTGCCTCACCTCAATCAACTAGCACGGAAATCAGAAATCTCATTGGCTTTGATTTTAGACCTAATGTAATTCGAGAATTCCACCCATCTGTAATTAGGGAATTATGGGATGATATCCCTCATCATTGCAAAGTTTGCGGTATTAAGCTTAAACAAGAAGAACTCTTTAATAGACACTTGGAGTGGCATGCCACAAGAGAACATGGTCCAATTAAGGCATCAAGAAGTTGGTATGCGAAGTCAAGTGATTGGATTGCTGGCAAGGCAGAATATTCATCTGAGTCCGAGTTTAATGATTCTGTTGATGTACACGATGAAAAAACAGGCAGCAGTCAATTGGATACGATGGTTCTAGCAGATGAAAACCAGTGTCTGTGTGTATTGTGCGGCGAGCTATTTGAAGATGTGTACTGTCATGAAAGGAATGAGTGGATGTTCAAAGGGACCATTTACATGAACTATTCAGATGTCAATAGTGAGATGGAAAGTGGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATCATCACCAATTTGGATAATGATTAA
>Glyma03g34910.2 sequence type=predicted peptide gene model=Glyma03g34910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMESTRRSLDRSREPGPKKPRLIDELSARQLPQRTAAVTTLASTRFRANDRDSEISDLGRGGGGGGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAAAVCANIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVFCKAYRQVDPCVHSSMKHLFGTWKGVFPPQSLQMIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVSDMTGAVLNSNEDSERPDRAAARPWLDPRINMLNNQHTHRDAFNDSVTEKSIDGSYGSSEYSSVISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDADTTSGQRNGFGLKRSFSNQEAPKSMNLDAHRQPRQSITNLRNNVMSGNWKTSEEEFTRDEMNNGLIDHGPNVLSNLSTDTWMADDENLEGEDHLHLQITRPIGTKVDREISTVKKQLPGLGGHPPSSWQLQKHHSIDKLNLKPDYSEGFVSTLSGLPTNASSLAVKKGNQSFMSNAVVGMTKFVGQQFDSGETESPSGQSPLRQQSPSLPGTVHHPHSMQNLANQELPPSLKTSQLLGGQIISQHIRDHSPTLRPIVKVGNLRRSQEKDMQGPLSSMTSLRPKLQQKQLNPSQTEVTATTKLPQSKVSLTRETSEQLTTNNLSAAPVKTGIIPKKSITSNLDPRKRPSQTGVQPTQSGRPTTLISSGSAVASPSSLDPLHNDSSTLPKKPKGKAGQPPQRLSTQPPASSNVSSSSAPILNAAKNNKPNPIANLLSTLVAKGLISAETESPTTVPSVAPKGSKDQTEIITTSCSLPVTSISGSAAVPVSSSDDEVDAATKTCLASPQSTSTEIRNLIGFDFRPNVIREFHPSVIRELWDDIPHHCKVCGIKLKQEELFNRHLEWHATREHGPIKASRSWYAKSSDWIAGKAEYSSESEFNDSVDVHDEKTGSSQLDTMVLADENQCLCVLCGELFEDVYCHERNEWMFKGTIYMNYSDVNSEMESGNVGPIIHAKCLSENSIITNLDND*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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