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Report for Sequence Feature Glyma03g34880

Feature Type:gene_model
Chromosome:Gm03
Start:42179022
stop:42184884
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g34880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G31660AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). | chr1:11331176-11333440 REVERSE LENGTH=444 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3871 KOG Cell adhesion complex protein bystin JGI ISS
PTHR12821Panther BYSTIN JGI ISS
PF05291PFAM Bystin JGI ISS
UniRef100_B9RQ30UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bystin, putative n=1 Tax=Ricinus communis RepID=B9RQ30_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JPX2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPX2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g34880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g34880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g190900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g34880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g34880
>Glyma03g34880.2   sequence type=CDS   gene model=Glyma03g34880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGAGGAAGGAGCGGATTCAGAACCCGGAGCCATTCGATCCGTACGGCGCCGACCCCGCGAAGACGAAGAAGCGTTCGAAGCCGCCGAAGCGGCACCAGCAGGAAGAGCAGTTCATTGCTCCCAAACTCAGCTCCAAGATCATGAAGCAGGCGCTGATCCAGCAGAAGGAGGAAGAGAAGGAGGAAACGCACGAGAACAACGCCGCCGCGAATTTATTCGAAGAGGTTCCGAACTTCGAGGAAGACGGCGGTGACGACATCGACGACTTCGCCGGGTTCTCCGAAACGCAGAGCCAGTTTGCCGGATATGATGAGGAGATTAATGAGGAGGATGAGAGACTAATGGAAGCATTCATTTCGAAGGAGCCCGGTCAGCAGAAAACACTCGCAGACCTCATTGTCCAAAGAATAAAAGAAAAGGATGCTTCTATTGCTTCAGAAAATCGACCTGTTCCAAAATTGGATAAATCCATAATTGACATATACAAGGGGGTTGGGACTCATCTCAGCAGATATACAATAGGCAAAATACCCAAGGCATTCAAACACATCCCCTCTATGCAACTTTGGGAGGAGGTCTTGTATATAACCGAACCTGAGAATTGGTCTCCAAATGCTCTTTATCAAGCCACTAGGATTTTTGCTTCTAATTTTGGTGCAAAAAAGGCAGAACGCTTCTACAAGCTTGTGTTGCTTCCAAGAGTGAGAGAAGATATAAGGAAGAATAAACGGCTGCATTTTGCCTTATATCAAACTCTGAAAAAGGCTTTGTACAAACCTGCTGCATTCTTTAAGGGCATACTGTTTCCGCTATGTGAGTCACGTACTTGCACTCTTAGGGAAGCAGTCATTATTGGAAGCATTATAGAAAAAGTTTCTATTCCTCCACTTCATTCAAGTGTTGCGCTATTGAAGCTTTCTGGAATGGAATATTGTGGCACCACTAGCTATTTCATAAAGCTTCTTCTGGAGAAAAAATATGCCTTGCCATATCGTGTGGTTGATGCAGTTGTTGCTCATTTTATGAGATTTTTCAATGAAACCAGGATAATGCCTGTTATATGGCACCAGTCACTTCTTGCTTTTGTGCAGAGGTACAAAAATGAGCTGCAGAAGGAAGATAAGGATAGATTAAGGAATCTACTGGAAAAGCAAAAGCATAAATTGGTTACACCTGAAATTAGTAGAGAGCTAGACCATAGCTGCAACCGAGGTGAAAAGGAGGAAGATCTTATTCCAGTATATGTGATAAACAAGACTATTGAAGAAGATAGATTTGACATTCCAGATGTACCAATGGAGGAGGATTAA
Predicted protein sequences of Glyma03g34880
>Glyma03g34880.2   sequence type=predicted peptide   gene model=Glyma03g34880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKRKERIQNPEPFDPYGADPAKTKKRSKPPKRHQQEEQFIAPKLSSKIMKQALIQQKEEEKEETHENNAAANLFEEVPNFEEDGGDDIDDFAGFSETQSQFAGYDEEINEEDERLMEAFISKEPGQQKTLADLIVQRIKEKDASIASENRPVPKLDKSIIDIYKGVGTHLSRYTIGKIPKAFKHIPSMQLWEEVLYITEPENWSPNALYQATRIFASNFGAKKAERFYKLVLLPRVREDIRKNKRLHFALYQTLKKALYKPAAFFKGILFPLCESRTCTLREAVIIGSIIEKVSIPPLHSSVALLKLSGMEYCGTTSYFIKLLLEKKYALPYRVVDAVVAHFMRFFNETRIMPVIWHQSLLAFVQRYKNELQKEDKDRLRNLLEKQKHKLVTPEISRELDHSCNRGEKEEDLIPVYVINKTIEEDRFDIPDVPMEED*






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