SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31660 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). | chr1:11331176-11333440 REVERSE LENGTH=444 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3871 | KOG | Cell adhesion complex protein bystin | JGI | ISS | |
| PTHR12821 | Panther | BYSTIN | JGI | ISS | |
| PF05291 | PFAM | Bystin | JGI | ISS | |
| UniRef100_B9RQ30 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bystin, putative n=1 Tax=Ricinus communis RepID=B9RQ30_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JPX2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPX2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g34880 not represented in the dataset |
Glyma03g34880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g190900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g34880.2 sequence type=CDS gene model=Glyma03g34880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAGAGGAAGGAGCGGATTCAGAACCCGGAGCCATTCGATCCGTACGGCGCCGACCCCGCGAAGACGAAGAAGCGTTCGAAGCCGCCGAAGCGGCACCAGCAGGAAGAGCAGTTCATTGCTCCCAAACTCAGCTCCAAGATCATGAAGCAGGCGCTGATCCAGCAGAAGGAGGAAGAGAAGGAGGAAACGCACGAGAACAACGCCGCCGCGAATTTATTCGAAGAGGTTCCGAACTTCGAGGAAGACGGCGGTGACGACATCGACGACTTCGCCGGGTTCTCCGAAACGCAGAGCCAGTTTGCCGGATATGATGAGGAGATTAATGAGGAGGATGAGAGACTAATGGAAGCATTCATTTCGAAGGAGCCCGGTCAGCAGAAAACACTCGCAGACCTCATTGTCCAAAGAATAAAAGAAAAGGATGCTTCTATTGCTTCAGAAAATCGACCTGTTCCAAAATTGGATAAATCCATAATTGACATATACAAGGGGGTTGGGACTCATCTCAGCAGATATACAATAGGCAAAATACCCAAGGCATTCAAACACATCCCCTCTATGCAACTTTGGGAGGAGGTCTTGTATATAACCGAACCTGAGAATTGGTCTCCAAATGCTCTTTATCAAGCCACTAGGATTTTTGCTTCTAATTTTGGTGCAAAAAAGGCAGAACGCTTCTACAAGCTTGTGTTGCTTCCAAGAGTGAGAGAAGATATAAGGAAGAATAAACGGCTGCATTTTGCCTTATATCAAACTCTGAAAAAGGCTTTGTACAAACCTGCTGCATTCTTTAAGGGCATACTGTTTCCGCTATGTGAGTCACGTACTTGCACTCTTAGGGAAGCAGTCATTATTGGAAGCATTATAGAAAAAGTTTCTATTCCTCCACTTCATTCAAGTGTTGCGCTATTGAAGCTTTCTGGAATGGAATATTGTGGCACCACTAGCTATTTCATAAAGCTTCTTCTGGAGAAAAAATATGCCTTGCCATATCGTGTGGTTGATGCAGTTGTTGCTCATTTTATGAGATTTTTCAATGAAACCAGGATAATGCCTGTTATATGGCACCAGTCACTTCTTGCTTTTGTGCAGAGGTACAAAAATGAGCTGCAGAAGGAAGATAAGGATAGATTAAGGAATCTACTGGAAAAGCAAAAGCATAAATTGGTTACACCTGAAATTAGTAGAGAGCTAGACCATAGCTGCAACCGAGGTGAAAAGGAGGAAGATCTTATTCCAGTATATGTGATAAACAAGACTATTGAAGAAGATAGATTTGACATTCCAGATGTACCAATGGAGGAGGATTAA
>Glyma03g34880.2 sequence type=predicted peptide gene model=Glyma03g34880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKRKERIQNPEPFDPYGADPAKTKKRSKPPKRHQQEEQFIAPKLSSKIMKQALIQQKEEEKEETHENNAAANLFEEVPNFEEDGGDDIDDFAGFSETQSQFAGYDEEINEEDERLMEAFISKEPGQQKTLADLIVQRIKEKDASIASENRPVPKLDKSIIDIYKGVGTHLSRYTIGKIPKAFKHIPSMQLWEEVLYITEPENWSPNALYQATRIFASNFGAKKAERFYKLVLLPRVREDIRKNKRLHFALYQTLKKALYKPAAFFKGILFPLCESRTCTLREAVIIGSIIEKVSIPPLHSSVALLKLSGMEYCGTTSYFIKLLLEKKYALPYRVVDAVVAHFMRFFNETRIMPVIWHQSLLAFVQRYKNELQKEDKDRLRNLLEKQKHKLVTPEISRELDHSCNRGEKEEDLIPVYVINKTIEEDRFDIPDVPMEED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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