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Report for Sequence Feature Glyma03g34780

Feature Type:gene_model
Chromosome:Gm03
Start:42097764
stop:42098523
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g34780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10020AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3091225-3091674 REVERSE LENGTH=149 SoyBaseE_val: 6.00E-48ISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009061GO-bp Annotation by Michelle Graham. GO Biological Process: anaerobic respiration SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1JPW0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JPW0_SOYBN SoyBaseE_val: 4.00E-91ISS
UniRef100_Q9SR67UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT3g10020/T22K18_16 n=1 Tax=Arabidopsis thaliana RepID=Q9SR67_ARATH SoyBaseE_val: 3.00E-45ISS

Expression Patterns of Glyma03g34780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34780
ParalogEvidenceComments
Glyma19g37460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g190100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g34780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g34780
>Glyma03g34780.2   sequence type=CDS   gene model=Glyma03g34780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCCATTGACGATAAACAAGAGACAGTGACGATCAGAGCGGTGAGCCACGACGAGGAAGGGAGAAAGAGGGTGGAAAAAATAGAGCTCAACACTCACAACATCCACACTATAAAGTACGTCGAGAAGAAGCTCATCAACAAGGGTGTGCAGCGCAAGGACCGCCACCCAGCCGACGGCATCAGAATCGGCCGGCCACCGCCAAAGTCCGGCCACGGCGGCAAATTCACGTGGGAGGGCCCGGCTAGCGTGGAGGATAACGAGCTCATGACGGAGCCGGCGGCCATGGACGAAGGAGACCCCAACTACTTGGACTGGGAAGAGAGAGGAGAAGAGACGTCGGAGTTGGTCGTTGGGGAGGTTGAAGTGGCCAAGGTTGCTGAGGAACACGATGGGGTTGCTAGAGTTGAAGTTGATCCTCGCTTGCGTGTTATCATGTCTGATCTATGTTAA
Predicted protein sequences of Glyma03g34780
>Glyma03g34780.2   sequence type=predicted peptide   gene model=Glyma03g34780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPIDDKQETVTIRAVSHDEEGRKRVEKIELNTHNIHTIKYVEKKLINKGVQRKDRHPADGIRIGRPPPKSGHGGKFTWEGPASVEDNELMTEPAAMDEGDPNYLDWEERGEETSELVVGEVEVAKVAEEHDGVARVEVDPRLRVIMSDLC*






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