Glyma03g34680 - SoyBase

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Report for Sequence Feature Glyma03g34680

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42027662
stop:	42029091
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36640	AT	Annotation by Michelle Graham. TAIR10: embryonic cell protein 63 \| chr2:15357019-15358552 REVERSE LENGTH=448	SoyBase	E_val: 3.00E-41	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PTHR23241	Panther	LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED	JGI		ISS
PTHR23241:SF11	Panther	LATE EMBRYOGENESIS ABUNDANT (LEA)	JGI		ISS
PF02987	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_Q9ZTY1	UniRef	Annotation by Michelle Graham. Best UniRef hit: 35 kDa seed maturation protein n=1 Tax=Glycine max RepID=Q9ZTY1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZTY1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 35 kDa seed maturation protein n=1 Tax=Glycine max RepID=Q9ZTY1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g34680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34680

Paralog	Evidence	Comments
Glyma19g37350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g189200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g34680

Limit To All Plant Sequences

>Glyma03g34680.2   sequence type=transcript   gene model=Glyma03g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCACACCACCTTCAACAAGTTGAATCAAACAGTGAAAGTAAAACATTGTGCAATTAATCATCAACTGCAAGTAGCCAGTGCATAAGATCAATGGCGTCAAGACAGCAATTCAAGGAAGACAGAGCCGAGGCAGCTGCAAAACTCGCAGCGAAAGACATCGGCGACATCAACAGAACAAACGAGCGCGACGAGGGGTACGACTTGCACGACGAAGCCAACTTCAAGCAAGCACGAGCTGAAGCAGCTGCAAAGCTGGCGGCCAAGGATCTGGAGGACGCTAACAGATTAAGAGACAACACTTTCAACACATGGAAAGAGCAACATCAGCATGATGAGAACAAACCCGGTGTGATAGGGTCCATGTTTAGAGCCGCCAAGGAAGCCGTGGTTGGGAAGCCTCACCACGAGGAAGTTTATGCAAAGGAAACAAAGATGGGTGAATATTCAGATTATGCGACTCAGAAGGCGAGGGAAACGAAGCAGAAGGCTGGGGAGTATACAGACTATGCGGCTCAGAAAGCAAAAGAAACCAAAGACTATGCTGCTGAGAAGGCTAAGAATGCTAAAGATACCACTGTGCAGAAAGCTGGAGAGTACAAGGATTATACCGCTGAGAAGGCTAAGAATGCTAAAGATACCACTGTGCAGAAAGCTGGAGAATACAAGGATTATACCGCTGAGAAGGCAATTGAAGGGAAGGACAGTGCAGTGGGGAAGCTTGGGGAGCTAAAGGAATCTGCTGCTGATGCTGCTAAAAGGGCTATGGGTTTCTTCACCGGTGGCAACAAAGACCAAACTAGAGAGGAGGAGGAGGAAACGAGGCGGAGTATGCAGGAGGTGAGGGTGCAAGATAAGGAGTATGGAACGGGACGTGGTACTGGAGAGAAGTTGGTGATAAAAATGGAAGAGTCGCGGCCAGGAGCGGTGGCGGATGCGCTCAAAGCAGCGAATAGGGCCATGGACGGCGATATGGAGGAGGAAGGCGTGCTTCATGTGGAGCGTCGTAGGGAGAAAATGTGATTCTCCTTCTCATCCATCATCATAATAATAATAATCACATCTTGTGTTTTGTAATAATAATGTAGGGTTACCTTTTTACTTAGTGGATCCTCTTTAGCTTTCATCCTCCTAAACCTTGTCTTTCTTTCATGCCATTTTAATGTACGTGTTACTTTTTAATTTTTAGAATGTATTATGAAAACCGGTTTTGGTTCTCCCTCCCTCTCTGTACAACCTCCAGGCCGAACGGAAATCACGACCAATTTAAGCTATTTTTTCATTTTTCATTAGTTACAAAT

Coding sequences of Glyma03g34680

Limit To All Plant Sequences

>Glyma03g34680.1   sequence type=CDS   gene model=Glyma03g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCAAGACAGCAATTCAAGGAAGACAGAGCCGAGGCAGCTGCAAAACTCGCAGCGAAAGACATCGGCGACATCAACAGAACAAACGAGCGCGACGAGGGGTACGACTTGCACGACGAAGCCAACTTCAAGCAAGCACGAGCTGAAGCAGCTGCAAAGCTGGCGGCCAAGGATCTGGAGGACGCTAACAGATTAAGAGACAACACTTTCAACACATGGAAAGAGCAACATCAGCATGATGAGAACAAACCCGGTGTGATAGGGTCCATGTTTAGAGCCGCCAAGGAAGCCGTGGTTGGGAAGCCTCACCACGAGGAAGTTTATGCAAAGGAAACAAAGATGGGTGAATATTCAGATTATGCGACTCAGAAGGCGAGGGAAACGAAGCAGAAGGCTGGGGAGTATACAGACTATGCGGCTCAGAAAGCAAAAGAAACCAAAGACTATGCTGCTGAGAAGGCTAAGAATGCTAAAGATACCACTGTGCAGAAAGCTGGAGAGTACAAGGATTATACCGCTGAGAAGGCTAAGAATGCTAAAGATACCACTGTGCAGAAAGCTGGAGAATACAAGGATTATACCGCTGAGAAGGCAATTGAAGGGAAGGACAGTGCAGTGGGGAAGCTTGGGGAGCTAAAGGAATCTGCTGCTGATGCTGCTAAAAGGGCTATGGGTTTCTTCACCGGTGGCAACAAAGACCAAACTAGACTGCATGTAACTGTGGTGCAGGAGGAGGAGGAGGAAACGAGGCGGAGTATGCAGGAGGTGAGGGTGCAAGATAAGGAGTATGGAACGGGACGTGGTACTGGAGAGAAGTTGGTGATAAAAATGGAAGAGTCGCGGCCAGGAGCGGTGGCGGATGCGCTCAAAGCAGCGAATAGGGCCATGGACGGCGATATGGAGGAGGAAGGCGTGCTTCATGTGGAGCGTCGTAGGGAGAAAATGTGA

>Glyma03g34680.2   sequence type=CDS   gene model=Glyma03g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCAAGACAGCAATTCAAGGAAGACAGAGCCGAGGCAGCTGCAAAACTCGCAGCGAAAGACATCGGCGACATCAACAGAACAAACGAGCGCGACGAGGGGTACGACTTGCACGACGAAGCCAACTTCAAGCAAGCACGAGCTGAAGCAGCTGCAAAGCTGGCGGCCAAGGATCTGGAGGACGCTAACAGATTAAGAGACAACACTTTCAACACATGGAAAGAGCAACATCAGCATGATGAGAACAAACCCGGTGTGATAGGGTCCATGTTTAGAGCCGCCAAGGAAGCCGTGGTTGGGAAGCCTCACCACGAGGAAGTTTATGCAAAGGAAACAAAGATGGGTGAATATTCAGATTATGCGACTCAGAAGGCGAGGGAAACGAAGCAGAAGGCTGGGGAGTATACAGACTATGCGGCTCAGAAAGCAAAAGAAACCAAAGACTATGCTGCTGAGAAGGCTAAGAATGCTAAAGATACCACTGTGCAGAAAGCTGGAGAGTACAAGGATTATACCGCTGAGAAGGCTAAGAATGCTAAAGATACCACTGTGCAGAAAGCTGGAGAATACAAGGATTATACCGCTGAGAAGGCAATTGAAGGGAAGGACAGTGCAGTGGGGAAGCTTGGGGAGCTAAAGGAATCTGCTGCTGATGCTGCTAAAAGGGCTATGGGTTTCTTCACCGGTGGCAACAAAGACCAAACTAGAGAGGAGGAGGAGGAAACGAGGCGGAGTATGCAGGAGGTGAGGGTGCAAGATAAGGAGTATGGAACGGGACGTGGTACTGGAGAGAAGTTGGTGATAAAAATGGAAGAGTCGCGGCCAGGAGCGGTGGCGGATGCGCTCAAAGCAGCGAATAGGGCCATGGACGGCGATATGGAGGAGGAAGGCGTGCTTCATGTGGAGCGTCGTAGGGAGAAAATGTGA

Predicted protein sequences of Glyma03g34680

Limit To All Plant Sequences

>Glyma03g34680.1   sequence type=predicted peptide   gene model=Glyma03g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRQQFKEDRAEAAAKLAAKDIGDINRTNERDEGYDLHDEANFKQARAEAAAKLAAKDLEDANRLRDNTFNTWKEQHQHDENKPGVIGSMFRAAKEAVVGKPHHEEVYAKETKMGEYSDYATQKARETKQKAGEYTDYAAQKAKETKDYAAEKAKNAKDTTVQKAGEYKDYTAEKAKNAKDTTVQKAGEYKDYTAEKAIEGKDSAVGKLGELKESAADAAKRAMGFFTGGNKDQTRLHVTVVQEEEEETRRSMQEVRVQDKEYGTGRGTGEKLVIKMEESRPGAVADALKAANRAMDGDMEEEGVLHVERRREKM*

>Glyma03g34680.2   sequence type=predicted peptide   gene model=Glyma03g34680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRQQFKEDRAEAAAKLAAKDIGDINRTNERDEGYDLHDEANFKQARAEAAAKLAAKDLEDANRLRDNTFNTWKEQHQHDENKPGVIGSMFRAAKEAVVGKPHHEEVYAKETKMGEYSDYATQKARETKQKAGEYTDYAAQKAKETKDYAAEKAKNAKDTTVQKAGEYKDYTAEKAKNAKDTTVQKAGEYKDYTAEKAIEGKDSAVGKLGELKESAADAAKRAMGFFTGGNKDQTREEEEETRRSMQEVRVQDKEYGTGRGTGEKLVIKMEESRPGAVADALKAANRAMDGDMEEEGVLHVERRREKM*

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