Glyma03g34600 - SoyBase

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Report for Sequence Feature Glyma03g34600

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41988146
stop:	41990029
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02070	AT	Annotation by Michelle Graham. TAIR10: Protein kinase family protein \| chr5:405895-408220 REVERSE LENGTH=657	SoyBase	E_val: 5.00E-180	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF691	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_A5C0W3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Vitis vinifera RepID=A5C0W3_VITVI	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337091	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337091 related cluster n=1 Tax=unknown RepID=UPI0002337091	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g34600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34600

Paralog	Evidence	Comments
Glyma19g37290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g188700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g34600

Limit To All Plant Sequences

>Glyma03g34600.1   sequence type=CDS   gene model=Glyma03g34600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACACAGCTTCCATTTTTGGTATGCCTTTCTTCTTATCCTTGTCCTTGGCCGCCACATTTCTTCACTGAAGACTTGTCCAAACTGTGGCACTATCCAAGTTCCATACCCTTTGAGCACAGATTCAACTTGTGGTGATCAAAACTACAAGCTTCGTTGTGATCCCCACTCTCAAAGGCTTTTGTTCGACATCCTCAACGGAAGTTCCTATCTTGTTCTCAGAATCATGTCTTCAAACCAACGCATGGTGGTTCAGCCATCACCTTGGTTACCAGGTTCGTGTGTCACACAAGACATGCCAAGAAGCAATGGTATATGGTTAAATCAATCACTCCCTTTCAACATAACTTCATCCAACACAGTGTTCCTCTTTAACTGTTCCCCTCGCCTCTTGGTTTCTCCACTTAACTGTACTTCTTCTAGTATTTGCCATCGTTATTTGGAGAATTCAGGCCATGTTGACACAAAACTATCATTAGAGTGTGCAAGTGGTCTTCACCCTTGTTGCACTTTTCTAGCTGGAGGGATACCTTCAGCTTACAGGATCCGGCTTCATGATTCTGGTTGCAAAGCATTCAGAAGCATAATTCACTTGAACCAAGACAAGCCTCCGAATCAGTGGGAGGAAGTTCTTGAAATTCAATGGTCTCCTCCACCTGAACCAGTCTGCAACAATCAAAGGGATTGCTCTGAAGACTCTAAGTGTTCCCCTACTAATAGAAATGGCCTATTTCGATGTCTTTGTAATGGGGGACACGTTTGGAACCCTTTTGAAGCAACCTGTGTGAGGTATGAGAGAAAATCCAAATGGAAAACCAGCTTGGTTGTCTCAATAGGGGTTGTTGTTACTTTTTTCTCCCTTGCTGTGGTTCTTACCATCATCAAAAAGTCCTGCAAACTCTCTAACTATAAAGAGAATCAGGCCAAGGACGAAAGAGAAGAGAAGCTGAAATCAAGTGCTATGGAGAAGCCTTGTAGGATGTTTCAACTGAAAGAGGTGAAGAAAGCAACAAACGGCTTTTCACACGAGAGGTTCTTGGGGAGTGGTGGATTTGGGGAAGTTTTCAAAGGTGAATTACAAGATGGAACATTGGTGGCTGTGAAAAAAGCTAGAGTGGGAAACCTGAAAAGCACCCAGCAAGTGCTTAATGAGGCCGCAATACTTTCTCAAGTGAATCACAAGAACCTAGTCAGGCTCTTGGGGTGTTGTGTGGAATCTGAGCTTCCACTTATGATCTATGAGTATATCTCAAATGGGACCCTCTATGACCATCTTCATGGTAGGTATTGTTCCAACTTTCTAGATTGGAAAACAAGGCTCAAAGTTGCTTTTCAAACTGCAGAAGCATTGGCTTACTTGCATTCTGCTGCACACACTCCAATCTACCATAGAGATGTTAAGTCAACAAACATACTATTGGATGATGAATTCAATGCAAAGGTCTCAGATTTTGGACTCTCAAGATTGGCTAGCCCTGGATTGAGTCACGTGTCAACATGTGCTCAGGGAACTTTAGGGTACTTGGATCCTGAATACTACCGCAACTACCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAACTTTTGACATCACAGAAAGCGATTGACTTCAATCGTGATCAAGATGATGTCAACCTAGCAATTCATGTGAACCAACATGCCAGCAATGGTACAATCATGGAAGTGATGGATCAAAGGCTTCTTATTTCCCTGGAGACTTTGGGGGATAAAATGTTCACAAGCATAAAACTCTTTTTGGAGCTTGCACTTGAATGTCTAAGGGAGAAGAAAGGTGAAAGGCCTAATATGAGGGATATTGTTCAACGCCTACTATGCATAATTAGGATTGTAGAACAAGAGTGA

Predicted protein sequences of Glyma03g34600

Limit To All Plant Sequences

>Glyma03g34600.1   sequence type=predicted peptide   gene model=Glyma03g34600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHSFHFWYAFLLILVLGRHISSLKTCPNCGTIQVPYPLSTDSTCGDQNYKLRCDPHSQRLLFDILNGSSYLVLRIMSSNQRMVVQPSPWLPGSCVTQDMPRSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSICHRYLENSGHVDTKLSLECASGLHPCCTFLAGGIPSAYRIRLHDSGCKAFRSIIHLNQDKPPNQWEEVLEIQWSPPPEPVCNNQRDCSEDSKCSPTNRNGLFRCLCNGGHVWNPFEATCVRYERKSKWKTSLVVSIGVVVTFFSLAVVLTIIKKSCKLSNYKENQAKDEREEKLKSSAMEKPCRMFQLKEVKKATNGFSHERFLGSGGFGEVFKGELQDGTLVAVKKARVGNLKSTQQVLNEAAILSQVNHKNLVRLLGCCVESELPLMIYEYISNGTLYDHLHGRYCSNFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSRLASPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFNRDQDDVNLAIHVNQHASNGTIMEVMDQRLLISLETLGDKMFTSIKLFLELALECLREKKGERPNMRDIVQRLLCIIRIVEQE*

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