Report for Sequence Feature Glyma03g34590
Feature Type: gene_model
Chromosome: Gm03
Start: 41977450
stop: 41983572
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g34590
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G03910 AT
Annotation by Michelle Graham. TAIR10: EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). | chr1:996432-100
SoyBase E_val: 0 ISS
GO:0000956 GO-bp
Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0051604 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein maturation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2370
KOG
Cactin
JGI ISS
PTHR21737 Panther
POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3
JGI ISS
PTHR21737:SF4 Panther
CACTIN-RELATED
JGI ISS
PF09732 PFAM
Cactus-binding C-terminus of cactin protein
JGI ISS
PF10312 PFAM
Conserved mid region of cactin
JGI ISS
UniRef100_G7L4Y2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cactin (ISS) n=1 Tax=Medicago truncatula RepID=G7L4Y2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JPU2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPU2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g34590
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g34590
Paralog Evidence Comments
Glyma19g37280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g34590 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g188600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g34590
Coding sequences of Glyma03g34590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g34590.1 sequence type=CDS gene model=Glyma03g34590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGAAGAGTAGCGGAAGAGACCGAAGACGAAGAAGATCACATGACTCTGAATCCGACTCACCTTCCGATTCCGACTCCGACAGACGCCACCGTAGCAATAGTCGCCGGTCGCGGCGGGACTCCGATGGCGACAGGAAGAAGAAGTCCTCGAAGTCTGAATCCGAGTCGCCTTCCGATTCCGACTCCGACATACGCCACCGTAGTAGCAGCCGCCGGTCGTGGCGGGACTCCGACGGCGATAGGAAGAAGTCCTCGAGGAGCATCACAGAAGAGGAAATTACAAAGTACATGGCCAGAAAGGCCCAATCGAAGGCAATGAAAGTAGCGAAAAAGTTGAAAACCAGTACGGTATCGGGCTATTCCAACGATTCGAATCCGTTTGGTGACTCTAATCTCAACGAGAAGTTTGTCTGGCGCAAGAAGATTGAGCGCGATGTTTCACAAGGTGTGTCTATTGATGCGTTTTCAATGAAGGCAGAGAAAAAGAAACAGAGAGAAAGGATGGCAGAAATTGAAAAAGTAAAAAAGAGAAGAGAGGAAAGGGCACTTGAGAAAGCAAGGCACGAGGAAGAAATGGCACTGTTAGCCAGAGAGCGTGCTCGAGCTGAGTTTCAGGACTGGGAAAAAAAAGAAGAGGAGTTTCATTTTGATCAAAGCAAAGTTAGGTCAGAAATTAGATTGCGTGAAGGGCGTGCCAGACCCATCGATGTCCTAACCAAGCATCTCAATGGCTCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTCTTCAAGGGTTTGACTGTGAACGAAATGAGTGAGCTACGTGACGACATCAAAATGCATCTAGACCTTGACAGGGCAACACCAACTCATGTAGAATATTGGGAGGCACTCCTTCTGGTTTGTGATTGGGAGCTAGCTGAAGCTCAAAGAAAGGATGCACTTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTGCTTGCAGAAGAAAGGGGTCTGCATTCCAGTGTTGAGCCAGATGTGAAGAGGCTTTTGCAGGGGAAGACACTTGCAGAGTTGGAGGCTTTACGGGTTCACATTGAATCAGAAATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAGGCCATTTTAAAACATCTCCACATTTATAAGGCCAAGGCTTGTTTAAAGGAAATTCATGCTAAATTGCTACGTAAGCATTTGCAATCTCTTGAGAGACCATTGGAGGATGAAGATAAATTGGAGAATGCTCATGTTATGATACCTGAGGAGGAAGATACTGAAGATGATATTAAAGTCCAATCTGCAGATGAATCATTCTCACCAGAGCCCATTAGAGAGGATCAAGAAGCTGATGATGAGGCTGGATCATTTTCACCACAACTGTTGCACGGTGATGAAAATGCGGAAGCTATTGACCCAGAAGAAGATAGAGCCATGCTGGAGCGGAATCGTAAGGCTGTATTAGAAGAGCAGCAAAGACGAGTTCAGGAAGCAATGGCATCAAAGCCAACTCCTTCTGAAGATCATTTTGAGATGAAGGCCTTAAAAGCTATGGGGGATATGGAAGATGGAGACTCTGTGTTTGGATCTGGTGCTGAAGTGAATCTGGATTCCCAGGTTTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTATTTCAACCGTGTTCACACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAACCCACCTCCAAAGATAGTCCAAGGGTACAAATTTAATATTTTCTACCCTGATCTTGTAGACAAGACAAAAGCCCCAACCTACACCATTGAGAAGGATGGCAGCAATGGGGAGACTTGCATTATAAGATTCCACGCAGGGCCACCATATGAAGACATAGCTTTCCGCATTGTTAACAAAGAATGGGAGTATTCTCATAAGAAAGGTTTTAAGTGTGCATTTGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCACCGCTACCGAAGATAA
Predicted protein sequences of Glyma03g34590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g34590.1 sequence type=predicted peptide gene model=Glyma03g34590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGKSSGRDRRRRRSHDSESDSPSDSDSDRRHRSNSRRSRRDSDGDRKKKSSKSESESPSDSDSDIRHRSSSRRSWRDSDGDRKKSSRSITEEEITKYMARKAQSKAMKVAKKLKTSTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVSQGVSIDAFSMKAEKKKQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVNEMSELRDDIKMHLDLDRATPTHVEYWEALLLVCDWELAEAQRKDALDRARVRGEEPPAELLAEERGLHSSVEPDVKRLLQGKTLAELEALRVHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKLLRKHLQSLERPLEDEDKLENAHVMIPEEEDTEDDIKVQSADESFSPEPIREDQEADDEAGSFSPQLLHGDENAEAIDPEEDRAMLERNRKAVLEEQQRRVQEAMASKPTPSEDHFEMKALKAMGDMEDGDSVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCAFERGILHVYFNFKRHRYRR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
