Glyma03g34270 - SoyBase

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Report for Sequence Feature Glyma03g34270

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41748638
stop:	41758499
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08080	AT	Annotation by Michelle Graham. TAIR10: alpha carbonic anhydrase 7 \| chr1:2517022-2518546 REVERSE LENGTH=275	SoyBase	E_val: 1.00E-72	ISS
GO:0006730	GO-bp	Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004089	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0382	KOG	Carbonic anhydrase	JGI		ISS
PTHR18952	Panther	CARBONIC ANHYDRASE	JGI		ISS
PTHR18952:SF2	Panther	gb def: similar to carbonic anhydrase va, mitochondrial precursor, carbonic anhydrase v,	JGI		ISS
PF00194	PFAM	Eukaryotic-type carbonic anhydrase	JGI		ISS
UniRef100_B9S0D9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carbonic anhydrase, putative n=1 Tax=Ricinus communis RepID=B9S0D9_RICCO	SoyBase	E_val: 2.00E-88	ISS
UniRef100_UPI0002337084	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337084 related cluster n=1 Tax=unknown RepID=UPI0002337084	SoyBase	E_val: 5.00E-171	ISS

Expression Patterns of Glyma03g34270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34270

Paralog	Evidence	Comments
Glyma19g36970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma03g34270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g34270

Limit To All Plant Sequences

>Glyma03g34270.2   sequence type=transcript   gene model=Glyma03g34270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCTGTGGCACCTGACATTCTACTCACAAAAGCCAAATCTCTCCACCATCTGAAACATGCAGCGTCAAAGCCACATTTCGGTCGCAATTTCACTGATATGCATCCTGTTTTGTTCCAAATTAACTAGAGCTCTTGATGAACCTGAGTATGGTTACAACGAAAAAAGTGAAAATGGGCCCCAACACTGGGGCGATCTGAAAGAAGAATGGGCAGACTGTAAAATAGGGCAAATGCAATCTCCTATTGATTTGTCCACTAATGGAGTGGAAGTGATCCCCAAGTTAGGGGGACTAAAGTACTGGAACTATAAGCCTCAACATGCTATTGTCTCCAACAGGGGTCATGATGTTGCGGTCATTTGGGGAGGGGATGCTGGTTCAATAGATATAAATGGAACACCTTTCTTCCTCCAACAAGCCCATTGGCACTGGCCTTCCGAACATACCATCAATGGCCGCAGGTATGACTTGGAGTTGCACATGGTTCATGTTAGCCCACAGCCTGATGGAACAAATAAGACTGCGGTTGTTGGTATTCTGTACAAGTACGGTTCCCCTGATCCGTTGCTCTCTAAGTTGGGAAAATACATAACGGAGATTCCTGAAGAGGATGAAGAAAAAAGCGTAGGGGTGATTGATCCCTCAAAAATCATGAAGGGCAGCAAGATGTACTACAGGTACATGGGATCACTCACTGTACCTCCTTGCACTGAAGGCATCATTTGGACCGTTGATAAGAAGGTAAGAACTGTTTCAAGGGGGCAAGTGAAGTTGGTCAAGGATACAGTACTTAATTATGTAAGTAAATCACTCTGAGGGATTTACTTTTC

Coding sequences of Glyma03g34270

Limit To All Plant Sequences

>Glyma03g34270.1   sequence type=CDS   gene model=Glyma03g34270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCCTCAAAGCCATATTTCGATTGCAATTTTGCTAATATCCATCCTATTTTGTTCCGTATCAACTAGAGCTCTTGATGAACCTGGGTATGGTTACAATGAAAAAAGTGCAAATGGCCCCCGATATTGGGGTGATCTCAAAGAAGAATGGGCAGCTTGTAAAATAGGGAAAATTCAATCTCCTATTGATTTGTCCACTAATGGAGTGGAAGTGATCCCCAAGTTAGGGGGACTAAAGTACTGGAACTATAAGCCTCAACATGCAACCGTCTCCAACAGGGGTCATGATGTTGCAGTCATTTGGGGAGGGGATGCTGGTTCAATAGATATAAATGGAACACCTTTCTTCCTCCAACAAGCCCATTGGCACTGGCCTTCCGAACATACCATCAATGGCCGCAGGTATGACTTGGAGTTGCACATGGTTCATGTTAGCCCACAGCCTGATGGAACAAATAAGACTGCGGTTGTTGGTATTCTGTACAAGTACGGTTCCCCTGATCCGTTGCTCTCTAAGTTGGGAAAATACATAACGGAGATTCCTGAAGAGGATGAAGAAAAAAGCGTAGGGGTGATTGATCCCTCAAAAATCATGAAGGGCAGCAAGATGTACTACAGGTACATGGGATCACTCACTGTACCTCCTTGCACTGAAGGCATCATTTGGACCGTTGATAAGAAGGTAAGAACTGTTTCAAGGGGGCAAGTGAAGTTGGTCAAGGATACAGTACTTAATTATGTAAGTAAATCACTCTGA

>Glyma03g34270.2   sequence type=CDS   gene model=Glyma03g34270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCGTCAAAGCCACATTTCGGTCGCAATTTCACTGATATGCATCCTGTTTTGTTCCAAATTAACTAGAGCTCTTGATGAACCTGAGTATGGTTACAACGAAAAAAGTGAAAATGGGCCCCAACACTGGGGCGATCTGAAAGAAGAATGGGCAGACTGTAAAATAGGGCAAATGCAATCTCCTATTGATTTGTCCACTAATGGAGTGGAAGTGATCCCCAAGTTAGGGGGACTAAAGTACTGGAACTATAAGCCTCAACATGCTATTGTCTCCAACAGGGGTCATGATGTTGCGGTCATTTGGGGAGGGGATGCTGGTTCAATAGATATAAATGGAACACCTTTCTTCCTCCAACAAGCCCATTGGCACTGGCCTTCCGAACATACCATCAATGGCCGCAGGTATGACTTGGAGTTGCACATGGTTCATGTTAGCCCACAGCCTGATGGAACAAATAAGACTGCGGTTGTTGGTATTCTGTACAAGTACGGTTCCCCTGATCCGTTGCTCTCTAAGTTGGGAAAATACATAACGGAGATTCCTGAAGAGGATGAAGAAAAAAGCGTAGGGGTGATTGATCCCTCAAAAATCATGAAGGGCAGCAAGATGTACTACAGGTACATGGGATCACTCACTGTACCTCCTTGCACTGAAGGCATCATTTGGACCGTTGATAAGAAGGTAAGAACTGTTTCAAGGGGGCAAGTGAAGTTGGTCAAGGATACAGTACTTAATTATGTAAGTAAATCACTCTGA

Predicted protein sequences of Glyma03g34270

Limit To All Plant Sequences

>Glyma03g34270.1   sequence type=predicted peptide   gene model=Glyma03g34270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQPQSHISIAILLISILFCSVSTRALDEPGYGYNEKSANGPRYWGDLKEEWAACKIGKIQSPIDLSTNGVEVIPKLGGLKYWNYKPQHATVSNRGHDVAVIWGGDAGSIDINGTPFFLQQAHWHWPSEHTINGRRYDLELHMVHVSPQPDGTNKTAVVGILYKYGSPDPLLSKLGKYITEIPEEDEEKSVGVIDPSKIMKGSKMYYRYMGSLTVPPCTEGIIWTVDKKVRTVSRGQVKLVKDTVLNYVSKSL*

>Glyma03g34270.2   sequence type=predicted peptide   gene model=Glyma03g34270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRQSHISVAISLICILFCSKLTRALDEPEYGYNEKSENGPQHWGDLKEEWADCKIGQMQSPIDLSTNGVEVIPKLGGLKYWNYKPQHAIVSNRGHDVAVIWGGDAGSIDINGTPFFLQQAHWHWPSEHTINGRRYDLELHMVHVSPQPDGTNKTAVVGILYKYGSPDPLLSKLGKYITEIPEEDEEKSVGVIDPSKIMKGSKMYYRYMGSLTVPPCTEGIIWTVDKKVRTVSRGQVKLVKDTVLNYVSKSL*

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