Glyma03g34240 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g34240

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41725823
stop:	41732390
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09880	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2A regulatory B subunit family protein \| chr3:3029902-3031931 FORWARD LENGTH=499	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0000159	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein phosphatase type 2A complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2085	KOG	Serine/threonine protein phosphatase 2A, regulatory subunit	JGI		ISS
PTHR10257	Panther	PROTEIN PHOSPHATASE 2A, REGULATORY SUBUNIT	JGI		ISS
PF01603	PFAM	Protein phosphatase 2A regulatory B subunit (B56 family)	JGI		ISS
UniRef100_B9S0E4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2a, regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9S0E4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JPR3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPR3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g34240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34240

Paralog	Evidence	Comments
Glyma19g36950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g185200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g34240

Limit To All Plant Sequences

>Glyma03g34240.1   sequence type=CDS   gene model=Glyma03g34240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAAGCGAATCATGAAGGGAGGGCAGAAGAAGCCCTCCAAGACGGACCCGAGCGATCCGTCGCCCTTGGCTCCGGCGGCGGCGGGTGCGGCAGCCGCTCCGGCGCTGGTGGTTCCTCCGCCGTCGGGCACCATAGAGCCTCTGCCTCTCTTCCGCGACGTGGCGGTCTCGGAGCGGCAGAACCTCTTCATCCGGAAGCTCCAGATATGCTGCCACGTGTTGGACTTCTCCGACACGCTGAAATCCGTTCGGGAGAAGGAAATCAAGAGACAGACTCTAATGGAGCTCGTGGATTTCATCCAATCCGGGTCGGGGAAGATAACGGAGACTTGCCAGGAAGAGATGATCAAAATGGTGTCGGCGAACGTTTTCCGGTGCCTCCCGCCGGCTTCGCACGAGAACACCGGCCAGGAAGCCACCGATCCGGAAGAGGAGGAGCCGTGCCTCGAACCAGCGTGGCCGCACTTACAACTCGTCTACGAGCTTCTCCTCAGATACGTGGTTTCCTCCGACACTGACACAAAGGTCGCAAAACGATATATTGATCATTCTTTTGTTCTCAAACTCCTTGATTTGTTTGACTCCGAGGACCCTCGTGAGCGCGAGTATTTGAAAACCATATTGCACCGTGTGTATGGGAAATTCATGGTTCATCGTCCCTTCATTAGGAAGGGCATTAACAACATATTTTTTCGGTTTATATATGAGACTGAGCGGCATAGTGGTATTGGGGAGCTTCTTGAGATTCTGGGGAGTATTATTAATGGGTTTGCTTTGCCCATGAAGGAGGAGCATAAGTTGTTTCTTGCTAGGGCGCTTCTGCCTCTGCATAAGCCCAAGCCGGTTGGGGTGTACCACCAGCAGTTGTCGTATTGCATTGCGCAGTTTGTGGAGAAGGATTACAAACTCGCGGACACGGTTATTAGGGGTTTGTTGAAGTATTGGCCAGTCACTAATTGCCAGAAGGAGGTGCTCTTCCTTGGGGAACTAGAGGAGGTGCTGGAGGCCACGCAGACCGCGGAGTTCCAACGCTGCATGGTCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGGTTGCAGAACGAGCTCTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTAATTGCCCAAAACAGGACTGTAGTATTACCCATAATATTTGAAGCATTGGAGAAAAATATCAAGAGTCATTGGAACCAGGCTGTTCACGGCCTGACTGTGAACGTTCGGAAAATGTTCATAGAAATGGATGCCGAATTGTTTGAAGAGTGTCAGAGGCAGTATGAAGAGAGGGAGGCTAAAGCAAAAGAATTAGAAGAGCAGCGGGAATTGAATTGGAAAAGACTGGCAGATGCAGCTGCACAGAATGGGGTGGATATGGTCACAGCTTAG

Predicted protein sequences of Glyma03g34240

Limit To All Plant Sequences

>Glyma03g34240.1   sequence type=predicted peptide   gene model=Glyma03g34240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKRIMKGGQKKPSKTDPSDPSPLAPAAAGAAAAPALVVPPPSGTIEPLPLFRDVAVSERQNLFIRKLQICCHVLDFSDTLKSVREKEIKRQTLMELVDFIQSGSGKITETCQEEMIKMVSANVFRCLPPASHENTGQEATDPEEEEPCLEPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKGINNIFFRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLARALLPLHKPKPVGVYHQQLSYCIAQFVEKDYKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQTAEFQRCMVPLFRQVARCLNSSHFQVAERALFLWNNEHIVSLIAQNRTVVLPIIFEALEKNIKSHWNQAVHGLTVNVRKMFIEMDAELFEECQRQYEEREAKAKELEEQRELNWKRLADAAAQNGVDMVTA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain