Glyma03g34210 - SoyBase

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Report for Sequence Feature Glyma03g34210

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41698593
stop:	41701798
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36840	AT	Annotation by Michelle Graham. TAIR10: ACT-like superfamily protein \| chr2:15451834-15453550 REVERSE LENGTH=410	SoyBase	E_val: 7.00E-162	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
PF01842	PFAM	ACT domain	JGI		ISS
UniRef100_B9S0G4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0G4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JPR0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPR0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g34210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34210

Paralog	Evidence	Comments
Glyma19g36910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g184800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g34210

Limit To All Plant Sequences

>Glyma03g34210.1   sequence type=CDS   gene model=Glyma03g34210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATACTGCACGACGACGTAGTGATAATCAGAGAGCCAGAGAAAGAAGGTGAAGCAACCGTCATAACCGTCAATTGCCCCGACAAGACCGGTCTGGGTTGTGATTTGTGTCGCATCATTCTCTTCTTCGGTCTTAGCATTGTCCGAGGAGACGTTTCCACCGACGGAAAATGGTGCTACATAGTATTCTGGGTGGTGGGGAAGCAAAGGATGAGGTGGAGTTTGTTGAAGAAGAGGCTAATTGAGGCGTGCCCTACTTGTTCTTCAGCTTCTGGAATTTCCTATTACCGTTCAGAATTGCAGCCTCCTAAACCACCAAATGTATTCCTTTTGACATTTTGTTGCCACGACCGTAAAGGCCTTTTACACGATGTTACAGAGGTTCTTAGTGAGCTAGAGCTCATCATACACAAAGTGAAGGTGTCTACTACACCTGATGGCAAAGTGGTAGATCTGTTTTTCATCACGGATACAAGGGAACTTCTACATACAAAGAAGAGAAGAGATGACACAATCGAACAGTTGGCAGCTATTTTGGGGGATCCCTTAATTGCCATTGACATTGAGTTGGTTGGCCCAGAAACCGCTGCTTGTTCTCAAGCATCTTCATTCCTTCCAAGTGCAATTTCAGAAGATATGTTTGATTTGGAATTACCTGATTCAATACGAAGTGGGACTTCCACATCAGATTCGGTTTCTATTACGATGGACAATTCGCTGAGTCCTGCTCACACGCTTGTCCAAATTATATGTCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGATTTCTTATGGGAGATTCTCACCAAAACCCAGAGGAAAATGTGAGCTTGACTTGTTCATAGTGCAAGCAGATGGGAAAAAGATAGTTGACCCCAGCAAGCAGAAGTCTTTGACATCACGCCTTAGGATGGAACTACTTCGTCCGCTCAGAATAACTGTTGTAAGCAGGGGTCCTGATACAGAGCTGCTGGTTGCAAACCCTGTGGAGTTGTCGGGCAAAGGACGACCTCTGTTTTTTATGATATTACTCTTGCTCTCAAAATGCTTGGCCCTTGCATATTTTCGGCTGAAGTTGGAAGACATGTGGTTGGAGACCGCGAGTGGGAAGTTTATAGAATCTTGCTTGATGAAGGGGAGGGTTTATCCATTCCAAGGAATAAGATTGAGAAAGGAGTTTGGAAGATGTTGA

Predicted protein sequences of Glyma03g34210

Limit To All Plant Sequences

>Glyma03g34210.1   sequence type=predicted peptide   gene model=Glyma03g34210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGILHDDVVIIREPEKEGEATVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVVGKQRMRWSLLKKRLIEACPTCSSASGISYYRSELQPPKPPNVFLLTFCCHDRKGLLHDVTEVLSELELIIHKVKVSTTPDGKVVDLFFITDTRELLHTKKRRDDTIEQLAAILGDPLIAIDIELVGPETAACSQASSFLPSAISEDMFDLELPDSIRSGTSTSDSVSITMDNSLSPAHTLVQIICQDHKGLLYDIMRTLKDYNIQISYGRFSPKPRGKCELDLFIVQADGKKIVDPSKQKSLTSRLRMELLRPLRITVVSRGPDTELLVANPVELSGKGRPLFFMILLLLSKCLALAYFRLKLEDMWLETASGKFIESCLMKGRVYPFQGIRLRKEFGRC*

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