Glyma03g34180 - SoyBase

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Report for Sequence Feature Glyma03g34180

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41652792
stop:	41659507
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03450	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:858954-862238 REVERSE LENGTH=630	SoyBase	E_val: 2.00E-157	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1645	KOG	RING-finger-containing E3 ubiquitin ligase	JGI		ISS
PTHR16047	Panther	RFWD3 PROTEIN	JGI		ISS
PTHR16047:SF7	Panther	RFWD3 PROTEIN-RELATED	JGI		ISS
UniRef100_G7L3X6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger and WD repeat domain-containing protein n=1 Tax=Medicago truncatula RepID=G7L3X6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337080	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337080 related cluster n=1 Tax=unknown RepID=UPI0002337080	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g34180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34180

Paralog	Evidence	Comments
Glyma19g36881	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g184600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g34180

Limit To All Plant Sequences

>Glyma03g34180.3   sequence type=transcript   gene model=Glyma03g34180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTTAGATGAATTTTGTCTAAAAACTAAACCAAAACCACATCCGAGAGCATCCTATAGTGAGAGAATGAAGGATAATATTTTGTAATGTGCACGAACAATGTTAAGTTATTTCACTTTGATCCTTTCCTTGAGTTCTTTCGCACCAATTAAACGATTGAAATTCACCTCCGTTTAGTTTTTTCCCCTCGGTGGCCCTTATAGGTTTGGGCTCTCCCCTCTCGTAATGGATTCAACACTATTTCTAAACCCCGCAGACTTTGAATTACCCCACGACTACGACGAAAACGCAGAAGCAAATCTCATTGAAATTCCCGCAGACTTTGGATTATCCCACGACGACGACGACGACGACGAAACCGACGATGAAGAAGAAGACGACGACGACGACGAAGACGAAGAGTATGTTCCCGCCGGGGCGCCTCCTAGGGTTTCGCACGACGCTCCCCGTGTCAGTACATCCAACAGCGAAGTCGTTACCCTCATCGAATCGCAGAACAAGCGCCGTAGAACCGAAGGAGGCGAGGCTTCTTGTTCCTTCGCGAATGGGAGCCTGAGCCAAGAGAACGAGTGGGCCAGCCCTGACGTTGACGGTCTCCTTTGCCCTATTTGTATGGACGCTTGGACCAATAACGGCGAGCATCACATCTGCTGTCTCCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAAATGGCTTCAACACCGCAGAAATTCCAATAAGTGTCCTCAATGTAAAGTGAAATGCTCGTTGAAGGATGTGAGGAAACTCTATGCCTCTCAAGTAGTGGCCGTCGAGGAAGAAAATCAGAAGAGAATTCGGTCACTTGAGGCCAAATGTGCTGCCCTTGAAAGCAAGGTAAGTAATTGGCACAAGAAGGAAACTGGATGGCAGAAAAGGGAAGCTGCATTGAGTTTTCAAGTTCAGAAGCTTACAGAGGGAAGTGATCGCCACAAGAAAGAAGCCGGATGGCAGAAGAAGGAAGCTGCATTGAATCTTCAAGTTCAGAAGCTTACTGAGAGAAACACTTATTTGGAGATGCTACTAGATATGCAGAGCAGGCAATTGATGTTCAATTTTGAATTGCAGAAAACGTTTGATCTGGATGGTGCTCGTGTTTTTGATATGGACATTTCAAATCAAATTTTATTAATTGCACAAAAGCGAAAGGCAATAGGTGGAATGCACTTGTTAACTAAAATGAGCTTGATGTCTCCATTTGAGATGCAAGACATCTTACTGCCTTCTGGCACAAATGGTGTTAAAGACCTACACATTTCTGCTTCTCATAGTAGTAGTAGCCTGGCCCTCTTTTCTTCTCTAGGAAAGAAATTATCAGTGCTCAGCTTGGACAGCGGCAACCTTGTTGTCAATTATGACCTACAGGTTCCTGCATGGTCTTGTTCATGGGATCTCAACAATTCACATTACATATATGCTGGACTACAGAATGGTTCTGTCTTGGTGTTTGATATGCGCCAAACTGCAGGACCCATGAAATCCCTTGTTGGTTTGACTAGCAACCCTGTGCATACTGTACATGCTCTTGCACAAACTTCAAGTTTGTCTTCTGGTGTTAAAACCATCCTATCTGCATCTGCTGTTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAGCGGCCGCTTATGGTTCCTGAAACTGATAATCAAGGAGTCTGCATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGCTTCATACCGACCGAAATATGACATGTCCATGGATCTGCGTCACTCTCAACCATCGCCCACTCCTCCTAGTACGCAACACGGAGTACAGGGCACTCATGTCTTGTTCAATAGAATGGGCAGTCATCATTTCCAAAAGGTGGGTTCCTCATATGCCAGCGTAAGTAAATTTCTACTACCAAAATGTGTAATTATGGACATAGAGGATCAGAGCAGATTGTTTGCATCTTTGAATGAAGATACACGTGATTTGGTCTTGCATGCGTTGCCATCTTTTAGAGTTCTTCAGCAATTGAAAATGCAAGCTCAGGGCCGTGATCTTAGGTACTCACCTAGCCATGGAATTCTTGGTTGTTTAAGTGAGAACACATTGCAGCTTTTTTCCAAACGCTCGTGGTAAAGGTAATTCTTCCTGCAATGTCGTTTCAAGAATAAGGGGTTCATTGGGGTTGATTTTTTGGGGGTTCATTTACGATATGCAAGAAAAGATTGATGTAGCACCTATTGAGAAAAAAATGACAGGAAATCACTTAAGGTAATTTGGACATGTACAAAAGAGATCACAAGAGATGTCAATTAGAAGGGTGGATAACATGATTTTTTAGTCCAGCAAAAAGGAGAAAAGGGAGACTGAAGAGGACATTGTAGGAAATCAACAAGGGAGACCTTAGACTCAATATCTTTGAAACCTTGATTTTCTTCGGCGTTGTGTCGAGTACTGTAGTATAATAATGTAACTGACTTTATTTAATGGGATAAGACTTTGTTGTTATTCTAAATTATTCTTAGAATTTTAGGTTTCCTTAAAGTAGTTGATAGCTTTCCTTAAATTACTTTGTTCATTCTTCTCTAATTATTTTGTAGGGATTTTTTCCCCATTTGTTTGTAAATTGGAGCAGTAATGCTGATATTGATGTGACAATGGTAAGATACAGATTGTCGTTAAGAACAAACCATGATTACGTGAAAGTCACTAAAACTATTAATTTTGATGCAATG

Coding sequences of Glyma03g34180

Limit To All Plant Sequences

>Glyma03g34180.2   sequence type=CDS   gene model=Glyma03g34180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAACACTATTTCTAAACCCCGCAGACTTTGAATTACCCCACGACTACGACGAAAACGCAGAAGCAAATCTCATTGAAATTCCCGCAGACTTTGGATTATCCCACGACGACGACGACGACGACGAAACCGACGATGAAGAAGAAGACGACGACGACGACGAAGACGAAGAGTATGTTCCCGCCGGGGCGCCTCCTAGGGTTTCGCACGACGCTCCCCGTGTCAGTACATCCAACAGCGAAGTCGTTACCCTCATCGAATCGCAGAACAAGCGCCGTAGAACCGAAGGAGGCGAGGCTTCTTGTTCCTTCGCGAATGGGAGCCTGAGCCAAGAGAACGAGTGGGCCAGCCCTGACGTTGACGGTCTCCTTTGCCCTATTTGTATGGACGCTTGGACCAATAACGGCGAGCATCACATCTGCTGTCTCCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAAATGGCTTCAACACCGCAGAAATTCCAATAAGTGTCCTCAATGTAAAGTGAAATGCTCGTTGAAGGATGTGAGGAAACTCTATGCCTCTCAAGTAGTGGCCGTCGAGGAAGAAAATCAGAAGAGAATTCGGTCACTTGAGGCCAAATGTGCTGCCCTTGAAAGCAAGGTAAGTAATTGGCACAAGAAGGAAACTGGATGGCAGAAAAGGGAAGCTGCATTGAGTTTTCAAGTTCAGAAGCTTACAGAGGGAAGTGATCGCCACAAGAAAGAAGCCGGATGGCAGAAGAAGGAAGCTGCATTGAATCTTCAAGTTCAGAAGCTTACTGAGAGAAACACTTATTTGGAGATGCTACTAGATATGCAGAGCAGGCAATTGATGTTCAATTTTGAATTGCAGAAAACGTTTGATCTGGATGGTGCTCGTGTTTTTGATATGGACATTTCAAATCAAATTTTATTAATTGCACAAAAGCGAAAGGCAATAGGTGGAATGCACTTGTTAACTAAAATGAGCTTGATGTCTCCATTTGAGATGCAAGACATCTTACTGCCTTCTGGCACAAATGGTGTTAAAGACCTACACATTTCTGCTTCTCATAGTAGTAGTAGCCTGGCCCTCTTTTCTTCTCTAGGAAAGAAATTATCAGTGCTCAGCTTGGACAGCGGCAACCTTGTTGTCAATTATGACCTACAGGTTCCTGCATGGTCTTGTTCATGGGATCTCAACAATTCACATTACATATATGCTGGACTACAGAATGGTTCTGTCTTGGTGTTTGATATGCGCCAAACTGCAGGACCCATGAAATCCCTTGTTGGTTTGACTAGCAACCCTGTGCATACTGTACATGCTCTTGCACAAACTTCAAGTTTGTCTTCTGGTGTTAAAACCATCCTATCTGCATCTGCTGTTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAGCGGCCGCTTATGGTTCCTGAAACTGATAATCAAGGAGTCTGCATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGCTTCATACCGACCGAAATATGACATGTCCATGGATCTGCGTCACTCTCAACCATCGCCCACTCCTCCTAGTACGCAACACGGAGTACAGGGCACTCATGTCTTGTTCAATAGAATGGGCAGTCATCATTTCCAAAAGGTGGGTTCCTCATATGCCAGCGTAAGTAAATTTCTACTACCAAAATGTGTAATTATGGACATAGAGGATCAGAGCAGATTGTTTGCATCTTTGAATGAAGATACACGTGATTTGGTCTTGCATGCGTTGCCATCTTTTAGAGTTCTTCAGCAATTGAAAATGCAAGCTCAGGGCCGTGATCTTAGGTACTCACCTAGCCATGGAATTCTTGGTTGTTTAAGTGAGAACACATTGCAGCTTTTTTCCAAACGCTCGTGGTAA

>Glyma03g34180.3   sequence type=CDS   gene model=Glyma03g34180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAACACTATTTCTAAACCCCGCAGACTTTGAATTACCCCACGACTACGACGAAAACGCAGAAGCAAATCTCATTGAAATTCCCGCAGACTTTGGATTATCCCACGACGACGACGACGACGACGAAACCGACGATGAAGAAGAAGACGACGACGACGACGAAGACGAAGAGTATGTTCCCGCCGGGGCGCCTCCTAGGGTTTCGCACGACGCTCCCCGTGTCAGTACATCCAACAGCGAAGTCGTTACCCTCATCGAATCGCAGAACAAGCGCCGTAGAACCGAAGGAGGCGAGGCTTCTTGTTCCTTCGCGAATGGGAGCCTGAGCCAAGAGAACGAGTGGGCCAGCCCTGACGTTGACGGTCTCCTTTGCCCTATTTGTATGGACGCTTGGACCAATAACGGCGAGCATCACATCTGCTGTCTCCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAAATGGCTTCAACACCGCAGAAATTCCAATAAGTGTCCTCAATGTAAAGTGAAATGCTCGTTGAAGGATGTGAGGAAACTCTATGCCTCTCAAGTAGTGGCCGTCGAGGAAGAAAATCAGAAGAGAATTCGGTCACTTGAGGCCAAATGTGCTGCCCTTGAAAGCAAGGTAAGTAATTGGCACAAGAAGGAAACTGGATGGCAGAAAAGGGAAGCTGCATTGAGTTTTCAAGTTCAGAAGCTTACAGAGGGAAGTGATCGCCACAAGAAAGAAGCCGGATGGCAGAAGAAGGAAGCTGCATTGAATCTTCAAGTTCAGAAGCTTACTGAGAGAAACACTTATTTGGAGATGCTACTAGATATGCAGAGCAGGCAATTGATGTTCAATTTTGAATTGCAGAAAACGTTTGATCTGGATGGTGCTCGTGTTTTTGATATGGACATTTCAAATCAAATTTTATTAATTGCACAAAAGCGAAAGGCAATAGGTGGAATGCACTTGTTAACTAAAATGAGCTTGATGTCTCCATTTGAGATGCAAGACATCTTACTGCCTTCTGGCACAAATGGTGTTAAAGACCTACACATTTCTGCTTCTCATAGTAGTAGTAGCCTGGCCCTCTTTTCTTCTCTAGGAAAGAAATTATCAGTGCTCAGCTTGGACAGCGGCAACCTTGTTGTCAATTATGACCTACAGGTTCCTGCATGGTCTTGTTCATGGGATCTCAACAATTCACATTACATATATGCTGGACTACAGAATGGTTCTGTCTTGGTGTTTGATATGCGCCAAACTGCAGGACCCATGAAATCCCTTGTTGGTTTGACTAGCAACCCTGTGCATACTGTACATGCTCTTGCACAAACTTCAAGTTTGTCTTCTGGTGTTAAAACCATCCTATCTGCATCTGCTGTTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAGCGGCCGCTTATGGTTCCTGAAACTGATAATCAAGGAGTCTGCATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGCTTCATACCGACCGAAATATGACATGTCCATGGATCTGCGTCACTCTCAACCATCGCCCACTCCTCCTAGTACGCAACACGGAGTACAGGGCACTCATGTCTTGTTCAATAGAATGGGCAGTCATCATTTCCAAAAGGTGGGTTCCTCATATGCCAGCGTAAGTAAATTTCTACTACCAAAATGTGTAATTATGGACATAGAGGATCAGAGCAGATTGTTTGCATCTTTGAATGAAGATACACGTGATTTGGTCTTGCATGCGTTGCCATCTTTTAGAGTTCTTCAGCAATTGAAAATGCAAGCTCAGGGCCGTGATCTTAGGTACTCACCTAGCCATGGAATTCTTGGTTGTTTAAGTGAGAACACATTGCAGCTTTTTTCCAAACGCTCGTGGTAA

Predicted protein sequences of Glyma03g34180

Limit To All Plant Sequences

>Glyma03g34180.2   sequence type=predicted peptide   gene model=Glyma03g34180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSTLFLNPADFELPHDYDENAEANLIEIPADFGLSHDDDDDDETDDEEEDDDDDEDEEYVPAGAPPRVSHDAPRVSTSNSEVVTLIESQNKRRRTEGGEASCSFANGSLSQENEWASPDVDGLLCPICMDAWTNNGEHHICCLPCGHIYGMSCIKKWLQHRRNSNKCPQCKVKCSLKDVRKLYASQVVAVEEENQKRIRSLEAKCAALESKVSNWHKKETGWQKREAALSFQVQKLTEGSDRHKKEAGWQKKEAALNLQVQKLTERNTYLEMLLDMQSRQLMFNFELQKTFDLDGARVFDMDISNQILLIAQKRKAIGGMHLLTKMSLMSPFEMQDILLPSGTNGVKDLHISASHSSSSLALFSSLGKKLSVLSLDSGNLVVNYDLQVPAWSCSWDLNNSHYIYAGLQNGSVLVFDMRQTAGPMKSLVGLTSNPVHTVHALAQTSSLSSGVKTILSASAVGLCQWNIDSEERPLMVPETDNQGVCISLAYCPSSDDIVASYRPKYDMSMDLRHSQPSPTPPSTQHGVQGTHVLFNRMGSHHFQKVGSSYASVSKFLLPKCVIMDIEDQSRLFASLNEDTRDLVLHALPSFRVLQQLKMQAQGRDLRYSPSHGILGCLSENTLQLFSKRSW*

>Glyma03g34180.3   sequence type=predicted peptide   gene model=Glyma03g34180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSTLFLNPADFELPHDYDENAEANLIEIPADFGLSHDDDDDDETDDEEEDDDDDEDEEYVPAGAPPRVSHDAPRVSTSNSEVVTLIESQNKRRRTEGGEASCSFANGSLSQENEWASPDVDGLLCPICMDAWTNNGEHHICCLPCGHIYGMSCIKKWLQHRRNSNKCPQCKVKCSLKDVRKLYASQVVAVEEENQKRIRSLEAKCAALESKVSNWHKKETGWQKREAALSFQVQKLTEGSDRHKKEAGWQKKEAALNLQVQKLTERNTYLEMLLDMQSRQLMFNFELQKTFDLDGARVFDMDISNQILLIAQKRKAIGGMHLLTKMSLMSPFEMQDILLPSGTNGVKDLHISASHSSSSLALFSSLGKKLSVLSLDSGNLVVNYDLQVPAWSCSWDLNNSHYIYAGLQNGSVLVFDMRQTAGPMKSLVGLTSNPVHTVHALAQTSSLSSGVKTILSASAVGLCQWNIDSEERPLMVPETDNQGVCISLAYCPSSDDIVASYRPKYDMSMDLRHSQPSPTPPSTQHGVQGTHVLFNRMGSHHFQKVGSSYASVSKFLLPKCVIMDIEDQSRLFASLNEDTRDLVLHALPSFRVLQQLKMQAQGRDLRYSPSHGILGCLSENTLQLFSKRSW*

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