Glyma03g34140 - SoyBase

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Report for Sequence Feature Glyma03g34140

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41609868
stop:	41618581
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03430	AT	Annotation by Michelle Graham. TAIR10: phosphoadenosine phosphosulfate (PAPS) reductase family protein \| chr5:849237-852867 REVERSE LENGTH=497	SoyBase	E_val: 0	ISS
GO:0006777	GO-bp	Annotation by Michelle Graham. GO Biological Process: Mo-molybdopterin cofactor biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
KOG2644	KOG	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	JGI		ISS
PTHR23293	Panther	MOLYBDOPTERIN-BINDING	JGI		ISS
PF00994	PFAM	Probable molybdopterin binding domain	JGI		ISS
PF01507	PFAM	Phosphoadenosine phosphosulfate reductase family	JGI		ISS
UniRef100_G7L3W8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FAD synthetase n=1 Tax=Medicago truncatula RepID=G7L3W8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233932B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233932B related cluster n=1 Tax=unknown RepID=UPI000233932B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g34140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34140

Paralog	Evidence	Comments
Glyma19g36860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g184200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g34140

Limit To All Plant Sequences

>Glyma03g34140.1   sequence type=CDS   gene model=Glyma03g34140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATCGATAAGGCAATTAGAGAGTGTGACGATCGAAGACTTCAGACCAAGTACAACAACGCTACCTATGTTGTTCAGAGAGCTTTGGCTTTGTATTCTATTGAGGAGGTTGCCTTCAGTTTCAATGGAGGAAAGGATTCAACAGTTTTGTTGCACATACTCAGGGCTGGCTATTTCTTGCATAAAAAGGGGCAAAATAGTGTCAATGGGGATCTAAAAGATTTTCCAATTCGAACAATATATTTTGAGAGTCCTTGTGCATTCCCAGAAATCAACTCATTTACCTATGATACTGCTGCCATCTATGGGTTGCAAATTGACACCATTAGCTTAGATTTCAAGTCTGGTTTGGAGGCTTTGCTAAAGGAAAAACCGATTCGAGCTATCTTCCTTGGAGTTCGAATTGGAGACCCTACTGCGGTTGGTCAAGAACAATTCTCCCCTAGTTCACCTGGGTGGCCACCTTTCATGAGGCTGAATCCCATTTTAGATTGGTCATACAGAGACGTGTGGGCCTTCCTTTTAACTTGCAAGGTGAACTATTGCAGCCTTTATGATCAAGGTTATACTTCAATTGGGAGCATATACGACACAGTTCCCAACTCATTATTATGCATTAGCAATTCTTCCAATAAATTCAAACCTGCATATTTACTTGCTGACGGAAGATTAGAGAGGGCAGGGAGGGCTAAAAGGCCATCTACTTCAACTGGTGGACAAATTCCTGCAGAGAGCAATGGCCTGACTAGCCAGGATTCATATAAAAACAGCATGCTCACAGCATCAATCATTGCTGTGGGAGATGAGATTCTGTTTGGCAATCTTGAGGATCTGTTGGGACCTTATTTGTGTAGGAAGCTGCATTCAATTGGTTGGTCTGTGTTACAACATTCTGCTGTGCACAACAATATAGATTCTGTGGCCGAAGAAGTTGAGAGACAAAAATCTAAAAGTGATATGGTATTTATATATGGAGGTGTAGGTCCACTGCATTCAGATGTTACCATAGCAGGCATTGCAAAAGCTTTTGGTGTTCGTTTGGCTCCTGATGAAGAATTTGAAGAATATCTCAGGCATATTATTGGTGATCAGTGTACTGGTGACCGAAATGAGATGGCTCAATTGCCTGAGGGCATAACTGAATTGTGGCATCATGACAAATTGTCTGTGCCCTTGATCAAGTGCGAAAATGTAATAATTCTTAGTGCAACAAATGTTCCGGAGATGGAAAAGCAGTGGGACTGTTGGATTGAATTAGCAAAATCTAGTGACCTACTAGCATTGCTGGAACCATATGTATCAAAGCATGTGACAACTAGTCTTTCAGATGTTGAAATTGCTCAACCTCTGTCAAAGCTTTGCCTTGAATTTCCAGATCTTTATATTGGCTGTTACCGCAATGCCAGATATGGATCTCTTATAGTAAGCTTCAAAGGAAAGGACCTAACACGCATTGAATCAGCTATAAAAGCTTTACAAAAGAAATTTCAACCCAGTGCTTTCATTGAGACGAAATAG

Predicted protein sequences of Glyma03g34140

Limit To All Plant Sequences

>Glyma03g34140.1   sequence type=predicted peptide   gene model=Glyma03g34140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIDKAIRECDDRRLQTKYNNATYVVQRALALYSIEEVAFSFNGGKDSTVLLHILRAGYFLHKKGQNSVNGDLKDFPIRTIYFESPCAFPEINSFTYDTAAIYGLQIDTISLDFKSGLEALLKEKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRLNPILDWSYRDVWAFLLTCKVNYCSLYDQGYTSIGSIYDTVPNSLLCISNSSNKFKPAYLLADGRLERAGRAKRPSTSTGGQIPAESNGLTSQDSYKNSMLTASIIAVGDEILFGNLEDLLGPYLCRKLHSIGWSVLQHSAVHNNIDSVAEEVERQKSKSDMVFIYGGVGPLHSDVTIAGIAKAFGVRLAPDEEFEEYLRHIIGDQCTGDRNEMAQLPEGITELWHHDKLSVPLIKCENVIILSATNVPEMEKQWDCWIELAKSSDLLALLEPYVSKHVTTSLSDVEIAQPLSKLCLEFPDLYIGCYRNARYGSLIVSFKGKDLTRIESAIKALQKKFQPSAFIETK*

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