SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03760 | AT | Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533 | SoyBase | E_val: 0 | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009294 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0042546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0051753 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mannan synthase activity | SoyBase | N/A | ISS |
| PTHR10587 | Panther | N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED | JGI | ISS | |
| PTHR10587:SF34 | Panther | MANNAN SYNTHASE | JGI | ISS | |
| PF00535 | PFAM | Glycosyl transferase family 2 | JGI | ISS | |
| UniRef100_Q6UDF0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mannan synthase 1 n=2 Tax=Cyamopsis tetragonoloba RepID=CSLA1_CYATE | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E008 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E008 related cluster n=1 Tax=unknown RepID=UPI000233E008 | SoyBase | E_val: 0 | ISS |
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Glyma03g34060 not represented in the dataset |
Glyma03g34060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g36810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g183500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g34060.1 sequence type=CDS gene model=Glyma03g34060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAACCTAATCTTTGAAGAGCCTGAAGTCAGGGTTCCAGGAGACACTTCAAGCAGTCTGCGCTATGCCTGGGAATCAATACGAGCCCCAGTGATAATACCACTCCTAAAACTAGCTGTCATACTATGTTCAATTATGTCAATCATGCTATTTGTTGAAAGGGTAGCAATGGCAATTGTAATTTTAGTTGTCAAAGTGCTGGGGAAGAAAAGATACACCAAGTACAACTTGGAAGCCATGAAACAGAAGCTTGAGAGAAACAAAAGATTCCCCATGGTGTTGATCCAAATACCTATGTATAATGAGAAAGAGGTCTACAAGCTTTCAATTGGAGCAGTATGTGGGCTGTCATGGCCAGCTGACAGATTTATAGTTCAGGTTCTTGATGACTCAACAAATCAATCCTTAAGGGAATGTGTCCAAATGGAGTGTCAAAGATGGATACAAAAAGGTGTGAATGTCAAATATGAAACAAGGACAAATCGCAATGGTTACAAGGCAGGTGCCATGAAGGAGGGTTTGGAGAAGGAATATGTCGAGGATTGCGAGTATGTAGCAATATTTGATGCAGATTTCCAGCCAGATGCAGATTTTCTATGGAATACAATCCCTTATCTGCTTGAGAACCCAAAATTGGGTTTGGTTCAAGCAAGATGGAAATTTGTGAATTCCAAGGAATGCATGATGACAAAGCTTCAAGAGATGTCACTCGATTATCACTTTAGTGTTGAACAGGAAGTGGGCTCTTCAACATACTCATTCTTTGGTTTCAATGGGACAGCAGGAATTTGGCGGATTCAAGCAATAAAAGATGCTGGAGGATGGAAAGACCGAACCACAGTAGAAGATATGGACCTTGCAGTAAGGGCAAGCCTGCAAGGTTGGGAATTTGTTTTCGTGGGTGACATAAAAGTAAAAAATGAACTGCCAAGTACATTTAAAGCATACCGATATCAGCAGCACAGATGGTCATGTGGTCCAGCTAATCTCTTTAAGAAAATGACCATGGAAATCCTCTATTGCCATAGGGTACCGCTTCTCAAGAGACTTCATCTTGTCTATGCTTTCTTCTTTGTGAGGAAAATAGTTGCACATTGGGTCACTTTCTTCTTTTACTGCATAGTTATACCAGCTTGTGTGATAGTTCCTGAAGTCAGTCTCAAAAAGCAGATTGCCATATACATCCCAGCAACCATTACAATTCTAAATGCAGTCTCCACCCCAAGATCCATGCATCTACTAGTACTCTGGATACTCTTTGAGAATGTTATGTCCCTCCATCGAACTAAAGCAGCAATTATTGGACTCTTGGAAGCAAATCGTGTCAATGAATGGGTTGTGACTGAAAAGCTTGGAAATGCCATGAAACAGAGAAAGAATGCTAAGCCATCAAGAACTTCATGGTTCCGAATTATAGACAGGATCCACCCATTGGAGATCATAGTGGGGATGTATATGCTGCACTGCGCAATCTATGACCTGCTATTCGGACACGATCATTTCTTTATCTATCTGTTGTTGCAGGCAGGAGCTTTCTTTACAATGGGATTTGGGCAAGTGGGAACAATTGTACCCTACTAA
>Glyma03g34060.1 sequence type=predicted peptide gene model=Glyma03g34060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNLIFEEPEVRVPGDTSSSLRYAWESIRAPVIIPLLKLAVILCSIMSIMLFVERVAMAIVILVVKVLGKKRYTKYNLEAMKQKLERNKRFPMVLIQIPMYNEKEVYKLSIGAVCGLSWPADRFIVQVLDDSTNQSLRECVQMECQRWIQKGVNVKYETRTNRNGYKAGAMKEGLEKEYVEDCEYVAIFDADFQPDADFLWNTIPYLLENPKLGLVQARWKFVNSKECMMTKLQEMSLDYHFSVEQEVGSSTYSFFGFNGTAGIWRIQAIKDAGGWKDRTTVEDMDLAVRASLQGWEFVFVGDIKVKNELPSTFKAYRYQQHRWSCGPANLFKKMTMEILYCHRVPLLKRLHLVYAFFFVRKIVAHWVTFFFYCIVIPACVIVPEVSLKKQIAIYIPATITILNAVSTPRSMHLLVLWILFENVMSLHRTKAAIIGLLEANRVNEWVVTEKLGNAMKQRKNAKPSRTSWFRIIDRIHPLEIIVGMYMLHCAIYDLLFGHDHFFIYLLLQAGAFFTMGFGQVGTIVPY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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