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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G46100 | AT | Annotation by Michelle Graham. TAIR10: Histidyl-tRNA synthetase 1 | chr3:16928444-16930984 REVERSE LENGTH=486 | SoyBase | E_val: 0 | ISS |
| GO:0006418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation | SoyBase | N/A | ISS |
| GO:0006427 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histidyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0004821 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histidine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG1936 | KOG | Histidyl-tRNA synthetase | JGI | ISS | |
| PTHR11476 | Panther | HISTIDYL-TRNA SYNTHETASE | JGI | ISS | |
| PF00587 | PFAM | tRNA synthetase class II core domain (G, H, P, S and T) | JGI | ISS | |
| PF03129 | PFAM | Anticodon binding domain | JGI | ISS | |
| UniRef100_B9S0H3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histidyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9S0H3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JPP8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPP8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g34050 not represented in the dataset |
Glyma03g34050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g183400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g34050.2 sequence type=transcript gene model=Glyma03g34050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTCCATCCAGCCAAGTAAGCTACACCAGTGAGGAACAGAAAACCTGAGCAAAAAACAAAACAAAACAGTAAGCTAAGCTTCACTGCCATGCCTGCAACGCCATTCTCGTGTTCGTTCCTCACTCTTCAACCGCGCTTCAACTCCTACGTTAACCCCATCTTCCGTTCACTCACCTTCCAACTCTCTTCTTCGCCGCTCCCATTCAATGCCAACTTCTCCAGCGTCAGACTCCACTCTTCGCTCTCGCGAGCGGCGGAGACCGATTCTCCGACCGGCGGAAGGTCCGGCGCGCTAACTCCCGGTCCCGCCGTCGCCGGTGAAGTTCAAAAGATCGACGTGAATCCTCCCAAGGGGACGCGCGACTTCCCGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAGGTTTCGCGGTTGTATGGATTTGAAGAGGTTGATTACCCGGTGCTTGAGTCGGAGGCATTGTTCACTAGGAAAGCAGGAGAAGAAATTAAGGATCAGCTTTATTGTTTTGAAGATCGAGGCAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCGGTACGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTACCAATGGAACATGGATATTATTGGTGTTCCCGGGGTTATGGCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGAATTACAGAATCAGATGTCGGATTTAAGGTTTCCAGTCGAAAGGTTCTGCAAGAAGTATTAAATTGTTATTCAGTACCAGAAAATTTATTTGGCAAGGTCTGCGTCATTATTGATAAAATTGAGAAAATTCCAGCTGACGAGATAAAGAAAGAGTTGAAAGCTGTTGGTCTATCTCAAGAGGCTGTCCAGGAGCTATTGCAAGTCCTTTCTGTGAAGTCATTGACCGAGTTAGAAGAGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGTTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGACATTGTGTGTGCCTTGGACGAAGATCTTCAAGGATGTGCTGCTATGGTCGCTAACATTCTCAGAGAAAAAGGGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATGGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGGGAATTCTGAATGGCAAAGGGGTGTGGTTGGTGTCAAAATTCTCTCTACTGCTGAACAGTATGAGGTTAAACTGGATGATCTGAAGTAAATCAGAATTTGAATTTTTTGTGGTTATGTATTCTGTCTTTACTATTGGTATTAATTTCACCTTGATTTTTTTTACATAGTCCTTTGAGACTCAAGTACTTGTTTTGTATGTGTACATACTCACCTGTGTATGCATATGTGATTATCCATATACCAAAACTTCCGCTTCTGTTTACATTATTTATCCATTTAAGTTCTTCACCCACATTGTCTGCTCCCCTCCCTCATTTCTAATCTGTGTGTGCAAGGACAAGATCATGTTGTAGATAGATCAATTTGGAATTTTCACTTGAAATGTTGAATTATTATAGAGT
>Glyma03g34050.1 sequence type=CDS gene model=Glyma03g34050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTGCAACGCCATTCTCGTGTTCGTTCCTCACTCTTCAACCGCGCTTCAACTCCTACGTTAACCCCATCTTCCGTTCACTCACCTTCCAACTCTCTTCTTCGCCGCTCCCATTCAATGCCAACTTCTCCAGCGTCAGACTCCACTCTTCGCTCTCGCGAGCGGCGGAGACCGATTCTCCGACCGGCGGAAGGTCCGGCGCGCTAACTCCCGGTCCCGCCGTCGCCGGTGAAGTTCAAAAGATCGACGTGAATCCTCCCAAGGGGACGCGCGACTTCCCGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAGGTTTCGCGGTTGTATGGATTTGAAGAGGTTGATTACCCGGTGCTTGAGTCGGAGGCATTGTTCACTAGGAAAGCAGGAGAAGAAATTAAGGATCAGCTTTATTGTTTTGAAGATCGAGGCAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCGGTACGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTACCAATGGAACATGGATATTATTGGTGTTCCCGGGGTTATGGCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGAATTACAGAATCAGATGTCGGATTTAAGGTTTCCAGTCGAAAGGTTCTGCAAGAAGTATTAAATTGTTATTCAGTACCAGAAAATTTATTTGGCAAGGTCTGCGTCATTATTGATAAAATTGAGAAAATTCCAGCTGACGAGATAAAGAAAGAGTTGAAAGCTGTTGGTCTATCTCAAGAGGCTGTCCAGGAGCTATTGCAAGTCCTTTCTGTGAAGTCATTGACCGAGTTAGAAGAGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGGGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATATGATCATTTGTTCTCAACTTTTGGTGCTGATGACATTGCTGCATGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAATTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGACATTGTGTGTGCCTTGGACGAAGATCTTCAAGGATGTGCTGCTATGGTCGCTAACATTCTCAGAGAAAAAGGGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATGGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGGGAATTCTGAATGGCAAAGGGGTGTGGTTGGTGTCAAAATTCTCTCTACTGCTGAACAGTATGAGGTTAAACTGGATGATCTGAAGTAA >Glyma03g34050.2 sequence type=CDS gene model=Glyma03g34050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTGCAACGCCATTCTCGTGTTCGTTCCTCACTCTTCAACCGCGCTTCAACTCCTACGTTAACCCCATCTTCCGTTCACTCACCTTCCAACTCTCTTCTTCGCCGCTCCCATTCAATGCCAACTTCTCCAGCGTCAGACTCCACTCTTCGCTCTCGCGAGCGGCGGAGACCGATTCTCCGACCGGCGGAAGGTCCGGCGCGCTAACTCCCGGTCCCGCCGTCGCCGGTGAAGTTCAAAAGATCGACGTGAATCCTCCCAAGGGGACGCGCGACTTCCCGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAGGTTTCGCGGTTGTATGGATTTGAAGAGGTTGATTACCCGGTGCTTGAGTCGGAGGCATTGTTCACTAGGAAAGCAGGAGAAGAAATTAAGGATCAGCTTTATTGTTTTGAAGATCGAGGCAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCGGTACGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTACCAATGGAACATGGATATTATTGGTGTTCCCGGGGTTATGGCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGAATTACAGAATCAGATGTCGGATTTAAGGTTTCCAGTCGAAAGGTTCTGCAAGAAGTATTAAATTGTTATTCAGTACCAGAAAATTTATTTGGCAAGGTCTGCGTCATTATTGATAAAATTGAGAAAATTCCAGCTGACGAGATAAAGAAAGAGTTGAAAGCTGTTGGTCTATCTCAAGAGGCTGTCCAGGAGCTATTGCAAGTCCTTTCTGTGAAGTCATTGACCGAGTTAGAAGAGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGTTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGACATTGTGTGTGCCTTGGACGAAGATCTTCAAGGATGTGCTGCTATGGTCGCTAACATTCTCAGAGAAAAAGGGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATGGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGGGAATTCTGAATGGCAAAGGGGTGTGGTTGGTGTCAAAATTCTCTCTACTGCTGAACAGTATGAGGTTAAACTGGATGATCTGAAGTAA
>Glyma03g34050.1 sequence type=predicted peptide gene model=Glyma03g34050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPATPFSCSFLTLQPRFNSYVNPIFRSLTFQLSSSPLPFNANFSSVRLHSSLSRAAETDSPTGGRSGALTPGPAVAGEVQKIDVNPPKGTRDFPPEDMRLRNWLFNHFKEVSRLYGFEEVDYPVLESEALFTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPIKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELIASIVTLFKRIGITESDVGFKVSSRKVLQEVLNCYSVPENLFGKVCVIIDKIEKIPADEIKKELKAVGLSQEAVQELLQVLSVKSLTELEERLGSSGEAVADLKQLFSLAEKIGYSKWLQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDHLFSTFGADDIAACGFGFGDAVIVELLKEKGLLPELNLQIDDIVCALDEDLQGCAAMVANILREKGQIVELVLESKPLKWVFKRAARLNAERLVLVGNSEWQRGVVGVKILSTAEQYEVKLDDLK* >Glyma03g34050.2 sequence type=predicted peptide gene model=Glyma03g34050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPATPFSCSFLTLQPRFNSYVNPIFRSLTFQLSSSPLPFNANFSSVRLHSSLSRAAETDSPTGGRSGALTPGPAVAGEVQKIDVNPPKGTRDFPPEDMRLRNWLFNHFKEVSRLYGFEEVDYPVLESEALFTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPIKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELIASIVTLFKRIGITESDVGFKVSSRKVLQEVLNCYSVPENLFGKVCVIIDKIEKIPADEIKKELKAVGLSQEAVQELLQVLSVKSLTELEERLGSSGEAVADLKQLFSLAEKIGYSKWLQFDASVVRGLAYYTGIVFELLKEKGLLPELNLQIDDIVCALDEDLQGCAAMVANILREKGQIVELVLESKPLKWVFKRAARLNAERLVLVGNSEWQRGVVGVKILSTAEQYEVKLDDLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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