Glyma03g34040 - SoyBase

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Report for Sequence Feature Glyma03g34040

Feature Type:	gene_model
Chromosome:	Gm03
Start:	41528283
stop:	41530268
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g34040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03380	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr5:832400-834301 REVERSE LENGTH=392	SoyBase	E_val: 1.00E-69	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF13	Panther	COPPER CHAPERONE-RELATED	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_B9S0H4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0H4_RICCO	SoyBase	E_val: 9.00E-69	ISS
UniRef100_I1JPP7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPP7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g34040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g34040

Paralog	Evidence	Comments
Glyma19g36800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g34040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g183300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g34040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g34040

Limit To All Plant Sequences

>Glyma03g34040.1   sequence type=CDS   gene model=Glyma03g34040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGAAAAAAGAAGCGGCGAAGAATGAGGGCGATAAGAAGCCTGAATCAGGAGCAAAGCAAAACGACGGACGCCTACCTGTCGTTTTGAAACTCGACATGCATTGCGAGGGATGTGTCAAGAAGATCAAACGCGCCGTTCGCCATTTCGACGGTGTGGAAGACGTTAAGACCGATCTATCAAGTAAGAAACTAACGGTTATTGGAAAAGTCGACCCTGCCAAAGTGCGAGATAAACTAGCGGAGAAAACTAAGAAGAAGGTCGAACTCATTTCTCCTCAGCCTAAGAAGGATTCCGCCGGGGATAAACCGCCGGAAGAGAAAAAATCCGAAGAGAAGAAACCGGAAGATAAAAAGGCAGAAGAAAAAACTCCGAAAGAGAGCACGGTGGTGTTGAAGATCAGACTGCACTGTGAAGGTTGCATTCAGAAGATTCGAAAGATTATCCTCAAAACCAAAGGAGTTGAGTCGGTGAACATTGAAGGAGGAAAGGATTTGGTGAGCGTAAAGGGGACGATGGACGTGAAAGAAATAGTACCGTATTTGAACGAGAAGCTGAAGCGAAACGTTGAAGTGGTCCCACCCAAAAAAGAGGGTGGTGATAAGAAAGAGAACAACAAGAAGGAAGGTGGTGGTGGTGGTGGTGCTGAAGGTGCAGCGAAGGTGGAGGTGAACAAAATGGAGCACTACGGGTACGCGTACCCAGCTCCCCATATGTACTGGCACGGTCACGGTGGATACGCACCTGGTGAAAGTAGTAGTAGTAGCAGCAGCAGCAACAACAGCTATGAGGTAGAGGTTCAATCAGGGTATTCGTATTCGAATCAAGGTTATGATGGTAATTACGTGAATTACCCTTACCAGCATGGGTATAATGATAATTACATGGCAATGGCACAACCACCACCCCCGTTCTACTTGAACCCTCACCATCCTCCTCCACAGATGTTCAGCGATGAGAATCCGAATGCGTGTTCCGTGATGTGA

Predicted protein sequences of Glyma03g34040

Limit To All Plant Sequences

>Glyma03g34040.1   sequence type=predicted peptide   gene model=Glyma03g34040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEKKEAAKNEGDKKPESGAKQNDGRLPVVLKLDMHCEGCVKKIKRAVRHFDGVEDVKTDLSSKKLTVIGKVDPAKVRDKLAEKTKKKVELISPQPKKDSAGDKPPEEKKSEEKKPEDKKAEEKTPKESTVVLKIRLHCEGCIQKIRKIILKTKGVESVNIEGGKDLVSVKGTMDVKEIVPYLNEKLKRNVEVVPPKKEGGDKKENNKKEGGGGGGAEGAAKVEVNKMEHYGYAYPAPHMYWHGHGGYAPGESSSSSSSSNNSYEVEVQSGYSYSNQGYDGNYVNYPYQHGYNDNYMAMAQPPPPFYLNPHHPPPQMFSDENPNACSVM*

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