Report for Sequence Feature Glyma03g33920
Feature Type: gene_model
Chromosome: Gm03
Start: 41418311
stop: 41420586
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g33920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G37035 AT
Annotation by Michelle Graham. TAIR10: unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:15555374-15556780 REVERSE LENGTH=433
SoyBase E_val: 8.00E-77 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1JPN6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPN6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q7XDC6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XDC6_ORYSJ
SoyBase E_val: 5.00E-06 ISS
Expression Patterns of Glyma03g33920
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g33920
Paralog Evidence Comments
Glyma19g36650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g33920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g182000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g33920
Coding sequences of Glyma03g33920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g33920.1 sequence type=CDS gene model=Glyma03g33920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCGACCACCATCCTCGGTTGCACCACCTTCGTTCAACCTCTCACCTCTTGAAAGAATCATTCTCCTCTTTCTCCTCCAATTTCCTCACATTTTTGTTCCTTTCTCTTTTAACTCTTTCTTTTCGCACCCTCGTCGAAACCGGCACCGCCCATGTCACCTCCTTCATCGACCGCGACCCTTCCCTCCGCGCCCTCCTCTCCCGCCTCGACCTCGCCGGAAACTCCCACAATCACCACAACAGCAACAACGGCCACCACGACCTTCCTTCTCCGAACAACCTCCGCCACCGCCGCCGCCCCTTCCTCCACCTCACCCGCGTCGGAACCCTAGACGACGATTTCTTCTCCGGCGACGACGACGACGCCCGCTCCCTCTTCGGCTCCATCCCCAAACCCTCCTCCAACGCCACCCTCCTCGCCCTCTCTCCCTTCAAAACCACCTCCGCCTTCTCCGATCTCCTCGCCGACGACGGAATTAGGGTTTCCCAAGTCATCCGCTCTGGCACCACCTTCAACACTCAAGGATTATCCTCCTTATCGTCGCACCACGACGACGACGACGACGACGACGACAGCGAGGAGAAGGAAGAACCGAAGAAAGAGAAGGTTGATTTGCAATTCTTCGTGAAGGGGATCGAGGTGGGCCGCCGCGACGCTGCGGCTCTCTTCTTTCTGGTGAGTTTCCTCTCCGCCGCGTACGGATGGGTGATCCTCGTTTTCCTCGTGACGTATTCGTGGGTGTTGGGCGTCGTTTTCGTTTCCGTCGTGAACGATCTGTTGGGTAGGTTTAGTTCCGTCACCGTTTTGGTTTGGGAAGGTTCGAGATTAGGTCTGAAGAGGCTTTCGGGGTTTATTCTGATGCGTTGGGCTGTGAGGGACGCGTTGACTCAGCTTCTAGGGTTGTGGTCGCCTGAAAAGAGTGGAGGAAGACGTACTCGTTTTTCAAGCTCTTTGTTAGGTTAA
Predicted protein sequences of Glyma03g33920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g33920.1 sequence type=predicted peptide gene model=Glyma03g33920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSDHHPRLHHLRSTSHLLKESFSSFSSNFLTFLFLSLLTLSFRTLVETGTAHVTSFIDRDPSLRALLSRLDLAGNSHNHHNSNNGHHDLPSPNNLRHRRRPFLHLTRVGTLDDDFFSGDDDDARSLFGSIPKPSSNATLLALSPFKTTSAFSDLLADDGIRVSQVIRSGTTFNTQGLSSLSSHHDDDDDDDDSEEKEEPKKEKVDLQFFVKGIEVGRRDAAALFFLVSFLSAAYGWVILVFLVTYSWVLGVVFVSVVNDLLGRFSSVTVLVWEGSRLGLKRLSGFILMRWAVRDALTQLLGLWSPEKSGGRRTRFSSSLLG*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
