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Report for Sequence Feature Glyma03g33890

Feature Type:gene_model
Chromosome:Gm03
Start:41374920
stop:41378920
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g33890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37040AT Annotation by Michelle Graham. TAIR10: PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725 SoyBaseE_val: 0ISS
GO:0006559GO-bp Annotation by Michelle Graham. GO Biological Process: L-phenylalanine catabolic process SoyBaseN/AISS
GO:0006598GO-bp Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009698GO-bp Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process SoyBaseN/AISS
GO:0009699GO-bp Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process SoyBaseN/AISS
GO:0009805GO-bp Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process SoyBaseN/AISS
GO:0009819GO-bp Annotation by Michelle Graham. GO Biological Process: drought recovery SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0042398GO-bp Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process SoyBaseN/AISS
GO:0046244GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid catabolic process SoyBaseN/AISS
GO:0046274GO-bp Annotation by Michelle Graham. GO Biological Process: lignin catabolic process SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016841GO-mf Annotation by Michelle Graham. GO Molecular Function: ammonia-lyase activity SoyBaseN/AISS
GO:0045548GO-mf Annotation by Michelle Graham. GO Molecular Function: phenylalanine ammonia-lyase activity SoyBaseN/AISS
KOG0222 KOG Phenylalanine and histidine ammonia-lyase JGI ISS
PTHR10362Panther IMIDAZOLONEPROPIONASE AND HISTIDINE AMMONIA-LYASE JGI ISS
PTHR10362:SF3Panther PHENYLALANINE AMMONIA-LYASE JGI ISS
PF00221PFAM Phenylalanine and histidine ammonia-lyase JGI ISS
UniRef100_I1JPN0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phenylalanine ammonia-lyase n=1 Tax=Glycine max RepID=I1JPN0_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JPN0UniRef Annotation by Michelle Graham. Best UniRef hit: Phenylalanine ammonia-lyase n=1 Tax=Glycine max RepID=I1JPN0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g33890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33890
ParalogEvidenceComments
Glyma19g36620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g181700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g33890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g33890
>Glyma03g33890.1   sequence type=CDS   gene model=Glyma03g33890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAACTAATGGCCACCAAAACGGTTCATTTTGCTTGTCCACTGCCAAGGGAAGTAGTGATCCCTTGAACTGGGGAGCGGCGGCGGAGGCGATGAAGGGGAGTCACCTGGACGAGGTGAAGCGCATGGTGGCCGAGTACCGCAAGCCGGTGGTCCGGCTCGGCGGAGAGACTCTCACCATCGCTCAGGTGGCCGCCGTGGCCGGACACGACCACGGCGTGGCGGTGGAGCTCTCAGAGTCAGCGAGAGAAGGAGTAAAGGCGAGCAGTGAGTGGGTGATGAACAGCATGAACAACGGCACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACGTCACACCGCCGAACCAAACAGGGTGGTGCTCTGCAGAAGGAACTCATCAGATTCTTAAACGCTGGAATATTTGGAAATGGAACTGAATCAAGCCATACCCTGCCACACACTGCAACCAGAGCAGCCATGTTAGTGAGAATCAACACTCTTCTTCAGGGGTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTGAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACAGCTTCTGGAGATCTTGTTCCACTTTCTTACATTGCTGGTTTGCTAACTGGCAGACCCAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAACGCAAAAGAAGCTTTTGAATTGGCTAGCATCAACTCTGAGTTCTTTGAATTGCAACCCAAGGAAGGTCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGATTAGCTTCTATGGTACTCTTTGAGGCTAATATACTAGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCTGAAGTGATGCAGGGGAAACCTGAATTCACTGACCATTTGACACACAAGCTAAAGCACCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCATATCTTGGATGGAAGTTCCTACATGAAAGCTGCTAAGAAGTTGCATGAGATTGATCCCTTGCAAAAGCCAAAACAAGATAGATATGCCCTTAGAACTTCACCACAGTGGCTTGGTCCTCTTATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGAGAGATCAACTCTGTGAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGCAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCACTTGCATCTATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTTTTACAACAATGGATTGCCTTCAAATCTCACTGCTAGCAGAAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTACTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACTACCCATGTCCAAAGTGCTGAGCAACACAACCAGGATGTCAACTCTTTGGGCTTGATCTCATCTAGAAAGACAAATGAAGCCATCGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTAGAGGAGAATTTGAAAAACTCGGTCAAGAACACCGTGAGCCAAGTTTCCAAAAGGATTCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCAAGATTTTGTGAGAAGGATCTGCTAAAAGTGGTTGATAGGGAGTATATATTTTCCTACATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAACTTAGGCAAGTGCTTGTAGATCATGCATTGGTAAATGCAGAGAGTGAGAAGGATGTGAACTCGTCCATCTTTCAAAAGATAGCAATCTTTGAGGAAGAGTTGAAGAATCTCTTGCCAAAAGAGGTTGAAGGTGCAAGGGCTGCTTATGAGAGTGGCAAAGCTGCAATTCCAAACAAGATCCAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAATTAGGGACTGGGTTGCTAACTGGAGAAAAGGTGAGGTCACCGGGTGAAGAGTTTGACAAATTATTCACAGCAATGTGCCAAGGGAAAATTATTGATCCTCTTATGGAGTGCCTTGGGGAGTGGAATGGAGCTCCTCTTCCAATCTCTTAA
Predicted protein sequences of Glyma03g33890
>Glyma03g33890.1   sequence type=predicted peptide   gene model=Glyma03g33890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEATNGHQNGSFCLSTAKGSSDPLNWGAAAEAMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAGHDHGVAVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFELASINSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVSKRILTTGVNGELHPSRFCEKDLLKVVDREYIFSYIDDPCSATYPLMQKLRQVLVDHALVNAESEKDVNSSIFQKIAIFEEELKNLLPKEVEGARAAYESGKAAIPNKIQECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLMECLGEWNGAPLPIS*






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