SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G37040 | AT | Annotation by Michelle Graham. TAIR10: PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725 | SoyBase | E_val: 0 | ISS |
| GO:0006559 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-phenylalanine catabolic process | SoyBase | N/A | ISS |
| GO:0006598 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009698 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process | SoyBase | N/A | ISS |
| GO:0009699 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009819 | GO-bp | Annotation by Michelle Graham. GO Biological Process: drought recovery | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0042398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0046244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid catabolic process | SoyBase | N/A | ISS |
| GO:0046274 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lignin catabolic process | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016841 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ammonia-lyase activity | SoyBase | N/A | ISS |
| GO:0045548 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phenylalanine ammonia-lyase activity | SoyBase | N/A | ISS |
| KOG0222 | KOG | Phenylalanine and histidine ammonia-lyase | JGI | ISS | |
| PTHR10362 | Panther | IMIDAZOLONEPROPIONASE AND HISTIDINE AMMONIA-LYASE | JGI | ISS | |
| PTHR10362:SF3 | Panther | PHENYLALANINE AMMONIA-LYASE | JGI | ISS | |
| PF00221 | PFAM | Phenylalanine and histidine ammonia-lyase | JGI | ISS | |
| UniRef100_I1JPN0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phenylalanine ammonia-lyase n=1 Tax=Glycine max RepID=I1JPN0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000189D365 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189D365 related cluster n=1 Tax=unknown RepID=UPI000189D365 | SoyBase | E_val: 0 | ISS |
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Glyma03g33880 not represented in the dataset |
Glyma03g33880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g181600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g33880.1 sequence type=CDS gene model=Glyma03g33880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCAACTACCATCACCAATGGGAGCCAAAACGGTTCGTTTTGCTTGTCCACTACTAAGGGAAGTAGTGATCCGTTAAACTGGGGAGCGGCGGCAGAGGCGATGAAGGGGAGCCACCTGGACGAGGTGAAGCGCATGGTGGCCGAGTACCGCAAGCCGGTGGTCCGGCTCGGCGGAGAGACGCTCACCATCGCTCAGGTGGCCGCCGTAGCCGGACACGACCTCGGTGTGGCGGTGGAGCTCTCAGAGTCTGCGAGAGAAGGAGTGAAGGCGAGCAGTGAGTGGGTGATGAACAGCATGAACAACGGCACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACATCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGATTCTTAAACGCTGGAATATTTGGAAATGGAACTGAATCAAGCCATACCCTGCCACACACTGCAACCAGAGCAGCCATGTTAGTGAGAATCAACACTCTTCTTCAGGGGTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTGAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACAGCTTCTGGAGATCTTGTTCCACTTTCTTACATTGCTGGTTTGCTAACTGGCAGACCCAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAACGCAAAAGAAGCTTTTGAATTGGCTAGCATCAACTCTGAGTTCTTTGAATTGCAACCCAAGGAAGGTCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGATTAGCTTCTATGGTACTCTTTGAGGCTAATATACTAGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCTGAAGTGATGCAGGGGAAACCTGAATTCACTGACCATTTGACACACAAGCTAAAGCACCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCATATCTTGGATGGAAGTTCCTACATGAAAGCTGCTAAGAAGTTGCATGAGATTGATCCCTTGCAAAAGCCAAAACAAGATAGATATGCCCTTAGAACTTCACCACAGTGGCTTGGTCCTCTTATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGAGAGATCAACTCTGTGAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGCAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCACTTGCATCTATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTTTTACAACAATGGATTGCCTTCAAATCTCACTGCTAGCAGAAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTACTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACTACCCATGTCCAAAGTGCTGAGCAACACAACCAGGATGTCAACTCTTTGGGCTTGATCTCATCTAGAAAGACAAATGAAGCCATCGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTAGAGGAGAATTTGAAAAACTCGGTCAAGAACACCGTGAGCCAAGTTTCCAAAAGGATTCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCAAGATTTTGTGAGAAGGATCTGCTAAAAGTGGTTGATAGGGAGTATATATTTTCCTACATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAACTTAGGCAAGTGCTTGTAGATCATGCATTGGTAAATGCAGAGAGTGAGAAGGATGTGAACTCGTCCATCTTTCAAAAGATAGCAATCTTTGAGGAAGAGTTGAAGAATCTCTTGCCAAAAGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGCAAAGCTGCAATTCCAAACAAGATCCAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAATTAGGGACTGGGTTGCTAACTGGAGAAAAGGTGAGGTCACCAGGTGAAGAGTTTGACAAATTATTCACAGCAATGTGCCAAGGGAAAATTATTGATCCTCTTATGGAGTGCCTTGGGGAGTGGAATGGAGCTCCTCTTCCAATCTCTTAA
>Glyma03g33880.1 sequence type=predicted peptide gene model=Glyma03g33880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEATTITNGSQNGSFCLSTTKGSSDPLNWGAAAEAMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAGHDLGVAVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFELASINSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVSKRILTTGVNGELHPSRFCEKDLLKVVDREYIFSYIDDPCSATYPLMQKLRQVLVDHALVNAESEKDVNSSIFQKIAIFEEELKNLLPKEVESARAAYESGKAAIPNKIQECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLMECLGEWNGAPLPIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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