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Report for Sequence Feature Glyma03g33840

Feature Type:gene_model
Chromosome:Gm03
Start:41319667
stop:41324046
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g33840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37210AT Annotation by Michelle Graham. TAIR10: lysine decarboxylase family protein | chr2:15624253-15626834 REVERSE LENGTH=215 SoyBaseE_val: 1.00E-134ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03641PFAM Possible lysine decarboxylase JGI ISS
UniRef100_C6TA03UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TA03_SOYBN SoyBaseE_val: 7.00E-161ISS
UniRef100_I0IUQ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytokinin riboside 5'-monophosphate phosphoribohydrolase-like n=1 Tax=Solanum lycopersicum RepID=I0IUQ2_SOLLC SoyBaseE_val: 1.00E-136ISS

Expression Patterns of Glyma03g33840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33840
ParalogEvidenceComments
Glyma19g36590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g181300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g33840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g33840
>Glyma03g33840.2   sequence type=transcript   gene model=Glyma03g33840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTTTAATTTTGAATGGTATTGGAATTAAGGTCTCAAGGAACATCGATCTGGTGTATGGAGGGGGAAGCATTGGTCTAATGGGTTTAGTTTCACAAGCTGTTCATGATGGCGGTCGCCATGTCATCGGAGTTATTCCCAAGACCCTCATGCCTCGAGAGCTAACTGGTGAAACAGTGGGAGAAGTAAAAGCTGTTGCTGATATGCACCAAAGGAAGGCAGAGATGGCCAAGCATTCAGACGCCTTTATTGCCTTACCAGGTGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCACAACTTGGTATTCATGACAAGCCGGTGGGATTAGTAAATGTTGATGGATACTTTAATTCCTTGCTGTCATTTATTGACAAAGCTGTGGAAGAGGGATTTATCAGTCCAAATGCTCGCCACATAATTGTATCAGCACCCACAGCAAAAGAGTTGGTGAAGAAATTGGAGGATTACGTTCCCTGTCATGAGGGTGTTGCTTCCAAGTTGAGCTGGCAGATAGAACAGCAGCTTGCTTACCCTCAAGATTATGACATGTCAAGGTAGTTGGGTTACTTCACATGCACGGAACATGAGACCATATAGAATTTTGGAGCTGGAACGAAGTTATATTTTCGACTATCGCACTATTCTGCTTTTATCCTTTTAATTTCTTGTGTAAATTACCAGGATTGACCTTAATTAATATGTGATACTACTTTATTAGTTATTACCTTGTGAAACTTTGATGCTCTTGAATTTGTAAGTACCCCCCGCTTCTGAACTTACTATTATCATTCAATGCCAATTAATTTTTAAGTTTAACTGGCCAAAAGAAGTACCTCGAGCAAAGTAAATTTTCTATATACCAGTACTAATTTGAATGAAAG
Coding sequences of Glyma03g33840
>Glyma03g33840.1   sequence type=CDS   gene model=Glyma03g33840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACACGAAGTGAAATGAGGCATTCAAAGTTCAAGAGGATTTGTGTGTTCTGTGGGAGTAGCCCCGGCAAGAAGAGTACCTACCAAGATGCTGCCATTGAACTTGGCAACGAATTGGTCTCAAGGAACATCGATCTGGTGTATGGAGGGGGAAGCATTGGTCTAATGGGTTTAGTTTCACAAGCTGTTCATGATGGCGGTCGCCATGTCATCGGAGTTATTCCCAAGACCCTCATGCCTCGAGAGCTAACTGGTGAAACAGTGGGAGAAGTAAAAGCTGTTGCTGATATGCACCAAAGGAAGGCAGAGATGGCCAAGCATTCAGACGCCTTTATTGCCTTACCAGGTGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCACAACTTGGTATTCATGACAAGCCGGTGGGATTAGTAAATGTTGATGGATACTTTAATTCCTTGCTGTCATTTATTGACAAAGCTGTGGAAGAGGGATTTATCAGTCCAAATGCTCGCCACATAATTGTATCAGCACCCACAGCAAAAGAGTTGGTGAAGAAATTGGAGGATTACGTTCCCTGTCATGAGGGTGTTGCTTCCAAGTTGAGCTGGCAGATAGAACAGCAGCTTGCTTACCCTCAAGATTATGACATGTCAAGGTAG

>Glyma03g33840.2   sequence type=CDS   gene model=Glyma03g33840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTAGTTTCACAAGCTGTTCATGATGGCGGTCGCCATGTCATCGGAGTTATTCCCAAGACCCTCATGCCTCGAGAGCTAACTGGTGAAACAGTGGGAGAAGTAAAAGCTGTTGCTGATATGCACCAAAGGAAGGCAGAGATGGCCAAGCATTCAGACGCCTTTATTGCCTTACCAGGTGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCACAACTTGGTATTCATGACAAGCCGGTGGGATTAGTAAATGTTGATGGATACTTTAATTCCTTGCTGTCATTTATTGACAAAGCTGTGGAAGAGGGATTTATCAGTCCAAATGCTCGCCACATAATTGTATCAGCACCCACAGCAAAAGAGTTGGTGAAGAAATTGGAGGATTACGTTCCCTGTCATGAGGGTGTTGCTTCCAAGTTGAGCTGGCAGATAGAACAGCAGCTTGCTTACCCTCAAGATTATGACATGTCAAGGTAG
Predicted protein sequences of Glyma03g33840
>Glyma03g33840.1   sequence type=predicted peptide   gene model=Glyma03g33840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTRSEMRHSKFKRICVFCGSSPGKKSTYQDAAIELGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEDYVPCHEGVASKLSWQIEQQLAYPQDYDMSR*

>Glyma03g33840.2   sequence type=predicted peptide   gene model=Glyma03g33840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEDYVPCHEGVASKLSWQIEQQLAYPQDYDMSR*






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