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Report for Sequence Feature Glyma03g33820

Feature Type:gene_model
Chromosome:Gm03
Start:41298436
stop:41299747
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g33820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03230AT Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF584 | chr5:769636-770136 FORWARD LENGTH=166 SoyBaseE_val: 6.00E-27ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04520PFAM Protein of unknown function, DUF584 JGI ISS
UniRef100_I1JPM4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPM4_SOYBN SoyBaseE_val: 4.00E-116ISS
UniRef100_Q9LYW2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 n=1 Tax=Arabidopsis thaliana RepID=Q9LYW2_ARATH SoyBaseE_val: 3.00E-24ISS

Expression Patterns of Glyma03g33820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g33820
ParalogEvidenceComments
Glyma19g36560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g33820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g181100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g33820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g33820
>Glyma03g33820.3   sequence type=transcript   gene model=Glyma03g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTATCCATAACCAACCCAAAAGCAATTATATAAACAAATGACAATAAGGAATAGTCAAAGAGTGTGAATGAAAGAAAAATCGCAAAACAGAGAGAGAAAGAAAACAGAGCAACATTCAATGGCGTCTAGGAAGGGCTTCCTTTCGAAAGTGAGTTCCATGTTTGCATCATCAAGCACCGATTTGGAGCCCAAATCCACAGATGGTGACTTGGAATTGGATGAAGCTGACGTGTTCAACTGGAACATGTCCAATGACAACAACAACAAGAACACTGTGACAGAGTCGAAGAAGAGGCCACGATCTGGTAAGAAGAAAAAGGTGGAGGGTGGTGGTGGCAAAGTGAACCCTGTGGCCTCGTCCTCAATGCCAGTGGCTATTCCTGATTGGTCCAAGATTCTGAAGGAGGACTTCAAGGAGCACGAGAAGAGAGACTTTGTTAGTGACGACGACGATGATCATGACGACGATCGTAGAGAACCAGTGCCTCCTCATGAGTATCTTGCTAGAACCAGAGAAGCTTCTCACTCAGTTCAAGAAGGGAAAGGAAGGACCCTCAAGGGTAGGGACTTGCGCAGTGTCAGAAATTCCATTTGGAAGAAATTGGGGTTTGAAGATTGATTCATTCATTAATTAGATTATATTAGTATAGACTATAGAGTAAATTGGTACTAGTGTCACACGGATATGAACATTTGATCTGATTCCATAACTTTTTTTTTATTTTTGGTTTAGGTGATCGATTTAGTCAAATGCAACCTAGTAGTTCTGTTAGGAAAGGTTTATATTTATAATTTTTTTTTTCTTTTCGGATGGATGACTCTTGGTTGTTAGGTTATATAAGGAGATATGTGAAGCCTCCTTAATTTTGGATGTTTAGAAGAAGGGATCACTAATCCTGCTTGTAAGTTGTAATTACGTGTTTTCAACTATTTAAATGCCTACTTATGATCATTTTAGTTC
Coding sequences of Glyma03g33820
>Glyma03g33820.2   sequence type=CDS   gene model=Glyma03g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAAAAATCGCAAAACAGAGAGAGAAAGAAAACAGAGCAACATTCAATGGCGTCTAGGAAGGGCTTCCTTTCGAAAGTGAGTTCCATGTTTGCATCATCAAGCACCGATTTGGAGCCCAAATCCACAGATGGTGACTTGGAATTGGATGAAGCTGACGTGTTCAACTGGAACATGTCCAATGACAACAACAACAAGAACACTGTGACAGAGTCGAAGAAGAGGCCACGATCTGGTAAGAAGAAAAAGGTGGAGGGTGGTGGTGGCAAAGTGAACCCTGTGGCCTCGTCCTCAATGCCAGTGGCTATTCCTGATTGGTCCAAGATTCTGAAGGAGGACTTCAAGGAGCACGAGAAGAGAGACTTTGTTAGTGACGACGACGATGATCATGACGACGATCGTAGAGAACCAGTGCCTCCTCATGAGTATCTTGCTAGAACCAGAGAAGCTTCTCACTCAGTTCAAGAAGGGAAAGGAAGGACCCTCAAGGGTAGGGACTTGCGCAGTGTCAGAAATTCCATTTGGAAGAAATTGGGGTTTGAAGATTGA

>Glyma03g33820.3   sequence type=CDS   gene model=Glyma03g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAAAAATCGCAAAACAGAGAGAGAAAGAAAACAGAGCAACATTCAATGGCGTCTAGGAAGGGCTTCCTTTCGAAAGTGAGTTCCATGTTTGCATCATCAAGCACCGATTTGGAGCCCAAATCCACAGATGGTGACTTGGAATTGGATGAAGCTGACGTGTTCAACTGGAACATGTCCAATGACAACAACAACAAGAACACTGTGACAGAGTCGAAGAAGAGGCCACGATCTGGTAAGAAGAAAAAGGTGGAGGGTGGTGGTGGCAAAGTGAACCCTGTGGCCTCGTCCTCAATGCCAGTGGCTATTCCTGATTGGTCCAAGATTCTGAAGGAGGACTTCAAGGAGCACGAGAAGAGAGACTTTGTTAGTGACGACGACGATGATCATGACGACGATCGTAGAGAACCAGTGCCTCCTCATGAGTATCTTGCTAGAACCAGAGAAGCTTCTCACTCAGTTCAAGAAGGGAAAGGAAGGACCCTCAAGGGTAGGGACTTGCGCAGTGTCAGAAATTCCATTTGGAAGAAATTGGGGTTTGAAGATTGA
Predicted protein sequences of Glyma03g33820
>Glyma03g33820.2   sequence type=predicted peptide   gene model=Glyma03g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEKSQNRERKKTEQHSMASRKGFLSKVSSMFASSSTDLEPKSTDGDLELDEADVFNWNMSNDNNNKNTVTESKKRPRSGKKKKVEGGGGKVNPVASSSMPVAIPDWSKILKEDFKEHEKRDFVSDDDDDHDDDRREPVPPHEYLARTREASHSVQEGKGRTLKGRDLRSVRNSIWKKLGFED*

>Glyma03g33820.3   sequence type=predicted peptide   gene model=Glyma03g33820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEKSQNRERKKTEQHSMASRKGFLSKVSSMFASSSTDLEPKSTDGDLELDEADVFNWNMSNDNNNKNTVTESKKRPRSGKKKKVEGGGGKVNPVASSSMPVAIPDWSKILKEDFKEHEKRDFVSDDDDDHDDDRREPVPPHEYLARTREASHSVQEGKGRTLKGRDLRSVRNSIWKKLGFED*






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