SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g33790

Feature Type:gene_model
Chromosome:Gm03
Start:41273676
stop:41275932
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g33790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01390AT Annotation by Michelle Graham. TAIR10: vacuolar membrane ATPase 10 | chr3:150265-150922 REVERSE LENGTH=110 SoyBaseE_val: 4.00E-44ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0015991GO-bp Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport SoyBaseN/AISS
GO:0000325GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016469GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex SoyBaseN/AISS
GO:0016471GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar proton-transporting V-type ATPase complex SoyBaseN/AISS
GO:0046933GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism SoyBaseN/AISS
KOG1772 KOG Vacuolar H+-ATPase V1 sector, subunit G JGI ISS
PTHR12713Panther VACUOLAR ATP SYNTHASE SUBUNIT G JGI ISS
PTHR12713:SF1Panther VACUOLAR ATP SYNTHASE SUBUNIT G JGI ISS
PF03179PFAM Vacuolar (H+)-ATPase G subunit JGI ISS
UniRef100_B9SUA9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar ATP synthase subunit G plant, putative n=1 Tax=Ricinus communis RepID=B9SUA9_RICCO SoyBaseE_val: 1.00E-53ISS
UniRef100_C6SV85UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SV85_SOYBN SoyBaseE_val: 1.00E-70ISS

Expression Patterns of Glyma03g33790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g33790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g180700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g33790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g33790
>Glyma03g33790.1   sequence type=CDS   gene model=Glyma03g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGCTGGCTGCTGAACAAGAAGCGCAAAGAATTGTCAATGCTGCAAAAAATGAAAAATTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCCGAGTATAGGGCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACAGAGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAAGAAAAGATTCATCACCTGAAAACTGAGGCTGAGAGGATATCAGGGGATGTTGTCTCCATGCTCCTCAAGCATGTAACAAGTGTGAAGAATTAG
Predicted protein sequences of Glyma03g33790
>Glyma03g33790.1   sequence type=predicted peptide   gene model=Glyma03g33790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNRGQGGIQQLLAAEQEAQRIVNAAKNEKLARLKQAKEEAEKEIAEYRAQLEYEFQKKVSQSSGDSGANVKRLEQETEEKIHHLKTEAERISGDVVSMLLKHVTSVKN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo